Ulcerative Colitis Regions

AS ATD CEL CRO JIA MS PBC PSO RA SLE T1D UC

A table of Human loci associated with Ulcerative Colitis. Cytogenetic bands are defined using data from UCSC genome browser, protein coding and non-coding genes were extracted from EnsEMBL v84. Hits were defined by taking the index variant as described in the listed publication. Starting at the variant of interest, the hit is extended out ±0.1cM. These hits are then merged together to form regions of the genome that are of interest to this disease.

The alleles shown are major allele > minor allele, with the odds ratio being defined for the risk allele. Other signals located in the same region as the primary signal have a pale yellow background and are shown in italics

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UC 1p36.23

chr1:7853370-8140630

rs35675666

UTS2 PARK7 TNFRSF9 ERRFI1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1p36.23	chr1:7853370-8140630	rs35675666 G>T	5.95e-13^C	1.14 (1.08-1.19)^C	G	024
1p36.23	chr1:7853370-8140630	rs35675666 G>T	4.84e-09^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs35675666 G>T	UC	029	4.84e-09^C
rs35675666 G>T	UC	024	5.95e-13^C	1.14 (1.08-1.19)^C	G
rs35675666 G>T	IBD	017	1.12e-15^C	1.11 (1.06-1.15)^C	G
rs35675666 G>T	CRO	021	1.13e-07^C	1.1 (1.05-1.15)^C	G

Genes

Protein-coding Genes UTS2 PARK7 TNFRSF9 ERRFI1
Non-coding Genes CTA-215D11.4 Y_RNA RP5-892F13.2 RP11-431K24.1
Protein Coding Genes +/-0.5Mb of Region PER3 CAMTA1 VAMP3 SLC45A1 RERE
Non-coding Genes +/-0.5Mb of Region CAMTA1-IT1 RP3-467L1.6 RP3-467L1.4 RP4-549F15.1 RP11-338N10.2 RP3-453P22.2 RP11-338N10.1 RP11-338N10.3 RP11-431K24.3 RNU1-7P RNU6-991P RP5-1115A15.2 RP11-431K24.4 Y_RNA RP5-1115A15.1 AL096855.1 SNORA77 RP11-431K24.2

UC 1p36.13

chr1:19821756-19953230

rs6426833

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1p36.13	chr1:19821756-19953230	rs6426833 A>G	2.39e-68^C	1.27 (1.22-1.32)^C	A	024
1p36.13	chr1:19821756-19953230	rs6426833 A>G	3.93e-35^D	1.3 (1.25-1.35)^D	A	029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6426833	IBD	017	1.06e-13	1.11	A
rs6426833	UC		3.77e-76	1.26	A
rs6426833 A>G	UC	029	3.93e-35^D	1.3 (1.25-1.35)^D	A
rs6426833 A>G	UC	024	2.39e-68^C	1.27 (1.22-1.32)^C	A

Genes

Protein-coding Genes PLA2G2E OTUD3
Non-coding Genes
Protein Coding Genes +/-0.5Mb of Region RNF186 TMCO4 PQLC2 HTR6 MINOS1-NBL1 NBL1 CAPZB MINOS1 UBXN10 PLA2G2A PLA2G2D PLA2G2F PLA2G5 VWA5B1 PLA2G2C
Non-coding Genes +/-0.5Mb of Region RP11-91K11.2 RNU4-28P RN7SL277P RP5-1056L3.3 RP5-1056L3.1 RN7SL304P RP3-340N1.2 RP3-340N1.6 LINC01141 RP4-745E8.2 RP4-749H3.2 UBXN10-AS1

UC 1p36.33

chr1:1190173-1452909

rs12103

TNFRSF18 TNFRSF4

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1p36.33	chr1:1190173-1452909	rs12103 G>A	2.73e-10^C	1.11 (1.06-1.16)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs12103 G>A	IBD	017	7.66e-13^C	1.10 (1.06-1.14)^C	A
rs12103 G>A	UC	024	2.73e-10^C	1.11 (1.06-1.16)^C	A
rs12103 G>A	CRO	021	6.96e-08^C	1.09 (1.04-1.13)^C	A

Genes

Protein-coding Genes MXRA8 CPSF3L TMEM88B UBE2J2 FAM132A ACAP3 CCNL2 B3GALT6 SDF4 ANKRD65 TNFRSF18 DVL1 SCNN1D PUSL1 TTLL10 TNFRSF4 MRPL20 VWA1 CPTP AURKAIP1 TAS1R3 ATAD3C
Non-coding Genes RP5-902P8.10 MIR6726 RP4-758J18.10 RP4-758J18.2 MIR6808 RP5-902P8.12 MIR6727 RP5-890O3.9 RP4-758J18.13 RP4-758J18.7 NDUFB4P8 RN7SL657P
Protein Coding Genes +/-0.5Mb of Region RNF223 PLEKHN1 NOC2L C1orf159 KLHL17 ISG15 PERM1 HES4 SAMD11 AGRN CFAP74 ATAD3A MIB2 TMEM240 AL645728.1 SLC35E2 NADK ATAD3B C1orf233 SSU72 TMEM52 GNB1 CALML6 CDK11A CDK11B SLC35E2B MMP23B
Non-coding Genes +/-0.5Mb of Region RP11-206L10.4 FAM166AP3 RP11-54O7.16 RP11-54O7.18 RP11-465B22.8 TTLL10-AS1 LINC01342 MIR429 RP11-206L10.2 RP11-206L10.9 RP11-54O7.1 RP11-54O7.10 RP11-54O7.11 RP11-54O7.3 FAM87B TUBB8P11 RP11-54O7.2 AL645608.1 MIR200B MIR200A CICP3 RNU6-1199P RP11-206L10.8 RP11-465B22.3 LINC01128 FAM41C LINC00115 RP11-54O7.17 RP11-54O7.14 RP5-857K21.4 RP5-832C2.5 RP11-345P4.7 MMP23A Metazoa_SRP RP1-283E3.4 RP11-345P4.11 RP11-345P4.9 RP1-283E3.8 RP1-140A9.1 RP11-345P4.10 RP11-345P4.6

UC 1p36.32

chr1:2431888-2879054

rs10797432 rs734999

TNFRSF14 FAM213B PLCH2 MMEL1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1p36.32	chr1:2431888-2879054	rs10797432 C>T	2.62e-12^C	1.08 (1.04-1.11)^C	C	024
1p36.32	chr1:2431888-2879054	rs734999 C>T	3.34e-09^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs734999	UC		2.70e-09	1.08	G
rs734999 C>T	UC	029	3.34e-09^C
rs10797432 C>T	IBD	017	4.65e-07^C	1.03 (1.01-1.06)^C	C
rs10797432 C>T	UC	024	2.62e-12^C	1.08 (1.04-1.11)^C	C

Genes

Protein-coding Genes PLCH2 FAM213B PANK4 TNFRSF14 MMEL1 TTC34 HES5
Non-coding Genes RP3-395M20.12 RP3-395M20.8 RP11-740P5.2 RP3-395M20.3 RP13-436F16.1 RP3-395M20.9 RP11-740P5.3 RP3-395M20.7 RP3-395M20.2
Protein Coding Genes +/-0.5Mb of Region FAAP20 MORN1 CFAP74 PRKCZ PEX10 RER1 GABRD SKI PRDM16 ACTRT2
Non-coding Genes +/-0.5Mb of Region RP5-892K4.1 RP11-547D24.3 RP11-181G12.2 RP11-181G12.4 AL590822.1 RP4-713A8.1 RP4-740C4.7 RP11-547D24.1 RP4-740C4.5 RP11-22L13.1 LINC00982 RP11-193J6.1 RP1-163G9.2

UC 1q23.3

chr1:161419627-161668253

rs1801274

FCGR3A FCRLA FCGR2B FCGR2A FCGR3B HSPA6

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1q23.3	chr1:161419627-161668253	rs1801274 A>G	2.12e-38^C	1.19 (1.15-1.23)^C	A	024
1q23.3	chr1:161419627-161668253	rs1801274 A>G	2.16e-20^D	1.2 (1.16-1.27)^D	A	029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1801274	UC		1.43e-41	1.19	A
rs1801274 C>T	AS	026	1.40e-09^C	1.11^C	T
rs1801274 A>G	SLE	015	4.10e-04^C	1.16 (1.09-1.20)^C	G
rs1801274 A>G	UC	029	2.16e-20^D	1.2 (1.16-1.27)^D	A
rs1801274 A>G	CRO	021	1.53e-07^C	1.08 (1.04-1.11)^C	A
rs1801274 A>G	SLE	047	1.04e-12^C	1.21 (1.11-1.21)^D	G
rs1801274 A>G	IBD	017	3.52e-28^C	1.12 (1.09-1.16)^C	A
rs1801274 A>G	UC	024	2.12e-38^C	1.19 (1.15-1.23)^C	A

Genes

Protein-coding Genes HSPA6 FCGR2B FCGR3B FCGR2A FCGR3A
Non-coding Genes RPS23P9 RP11-25K21.6 RPS23P10 FCGR2C HSPA7 RP11-5K23.5
Protein Coding Genes +/-0.5Mb of Region USP21 DEDD MPZ AL591806.1 UFC1 TSTD1 KLHDC9 NDUFS2 NR1I3 F11R USF1 RP11-544M22.13 SDHC TOMM40L FCER1G B4GALT3 CFAP126 ARHGAP30 NIT1 PVRL4 ADAMTS4 APOA2 PCP4L1 ITLN2 PFDN2 PPOX OLFML2B NOS1AP DUSP12 FCRLB FCRLA ATF6
Non-coding Genes +/-0.5Mb of Region RRM2P2 RP11-544M22.1 RP11-297K8.2 RNU6-481P RP11-122G18.7 ACA64 RP11-312J18.6 RP11-544M22.8 MIR5187 RP11-312J18.7 RP11-544M22.3 RP11-122G18.9 RP11-227F8.2 RP11-25K21.1 Y_RNA RP11-474I16.8 MIR4654 RPL31P11 RN7SL466P RP11-456P18.2

UC 1p31.3

chr1:67128876-67302310

rs11209026

IL12RB2 IL23R

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1p31.3	chr1:67128876-67302310	rs11209026 G>A	3.20e-62^C	1.69 (1.56-1.82)^C	G	024
1p31.3	chr1:67128876-67302310	rs11209026 G>A	5.12e-28^D	1.75 (1.56-1.92)^D	G	029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11209026	AS	026	1.94e-27	1.11	G
rs11209026	IBD	017	1.01e-96	2.01	G
rs11209026 G>A	PSO	013	7.13e-07^D	1.49 (1.75-1.27)^D	G
rs11209026 G>A	UC	029	5.12e-28^D	1.75 (1.56-1.92)^D	G
rs11209026 G>A	CRO	021	1.02e-146^C	2.38 (2.17-2.56)^C	G
rs11209026 G>A	AS	012	9.10e-14^C	1.89 (1.56-2.27)^D	G
rs11209026 G>A	UC	024	3.20e-62^C	1.69 (1.56-1.82)^C	G
rs11209026 G>A	CRO	011	1.00e-64^D	2.63 (2.38-3.03)^D	G

Genes

Protein-coding Genes IL23R C1orf141
Non-coding Genes AL109843.1 RNU6-586P RNU4ATAC4P RP11-131O15.2
Protein Coding Genes +/-0.5Mb of Region MIER1 INSL5 WDR78 SLC35D1 TCTEX1D1 SGIP1 GNG12 IL12RB2 SERBP1 GADD45A
Non-coding Genes +/-0.5Mb of Region RP4-598P13.1 RP4-547N15.3 SNORA31 AL354978.1 RP11-342H21.2 RNU6-1031P RP11-393N21.2 RN7SL392P RNU6-387P RP11-393N21.1 HNRNPCP9 RNU7-80P

UC 1q32.1

chr1:200062588-200168521

rs2816958

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1q32.1	chr1:200062588-200168521	rs2816958 G>A	1.98e-17^C	1.23 (1.16-1.3)^C	G	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2816958	UC		1.14e-18	1.20	G
rs2816958 G>A	UC	024	1.98e-17^C	1.23 (1.16-1.3)^C	G
rs2816958 G>A	IBD	017	8.22e-10^C	1.12 (1.08-1.18)^C	G

Genes

Protein-coding Genes NR5A2
Non-coding Genes RP11-47A17.2 AC096633.1
Protein Coding Genes +/-0.5Mb of Region KIF14 DDX59 ZNF281
Non-coding Genes +/-0.5Mb of Region RNU6-778P RNU6-609P RP11-567B20.1 RP11-567B20.2 RNU6-716P AL450244.1 RP11-2L13.1 RNU6-570P RP11-532L16.3 LINC00862 AL590126.1 FAM58BP RP11-532L16.1 RP11-469A15.2 RP11-121P12.1

UC 1p36.12

chr1:22326008-22411939

rs7524102 rs12568930

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1p36.12	chr1:22326008-22411939	rs12568930 T>C	1.26e-17^C	1.15 (1.1-1.2)^C	T	024
1p36.12	chr1:22326008-22411939	rs7524102 A>G	1.65e-13^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7524102	UC	024	2.45e-08	1.14	A
rs12568930	UC		4.40e-13	1.14	A
rs12568930 T>C	IBD	017	7.42e-14^C	1.1 (1.05-1.14)^C	T
rs7524102 A>G	UC	029	1.65e-13^C

Genes

Protein-coding Genes
Non-coding Genes RP11-415K20.2
Protein Coding Genes +/-0.5Mb of Region CELA3B WNT4 CDC42 HSPG2 CELA3A C1QA C1QC EPHA8 ZBTB40 EPHB2 C1QB
Non-coding Genes +/-0.5Mb of Region CDC42-IT1 RP1-224A6.3 RNU6-776P RP1-224A6.8 RP11-415K20.1 RNU6-1022P RP11-26H16.1 RN7SL386P RP1-224A6.9 MIR4418 LINC00339 RN7SL186P AL158086.1 MIR4684 ZBTB40-IT1 AL611946.1 RP11-69E9.1 MIR4253

UC 1q32.1

chr1:200892467-201069559

rs7554511

C1orf106 KIF21B

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1q32.1	chr1:200892467-201069559	rs7554511 C>A	9.74e-25^C	1.18 (1.14-1.22)^C	C	024
1q32.1	chr1:200892467-201069559	rs7554511 C>A	2.04e-13^D			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7554511	CRO		2.09e-27	1.16	C
rs7554511	IBD	017	1.04e-20	1.16	C
rs7554511 C>A	UC	024	9.74e-25^C	1.18 (1.14-1.22)^C	C
rs7554511 C>A	UC	029	2.04e-13^D
rs7554511 C>A	CRO	011	1.58e-07^D	1.14 (1.08-1.19)^D	C
rs7554511 C>A	CRO	021	7.81e-19^C	1.15 (1.11-1.19)^C	C

Genes

Protein-coding Genes C1orf106 KIF21B CACNA1S
Non-coding Genes MROH3P RNU6-704P RP11-168O16.1 RP11-168O16.2
Protein Coding Genes +/-0.5Mb of Region CAMSAP2 KIF14 DDX59 ZNF281 GPR25 IGFN1 TNNT2 LAD1 PKP1 TNNI1 ASCL5 PHLDA3 CSRP1 TMEM9
Non-coding Genes +/-0.5Mb of Region RPL34P6 RP11-92G12.3 RP11-469A15.2 RP11-121P12.1 RP11-134G8.2 RP11-567E21.3 RP11-27G14.4 RP11-134G8.10 RP11-134G8.5 RP11-134G8.7 RP11-134G8.6

UC 1q21.3

chr1:151565936-152018664

rs4845604

RORC

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1q21.3	chr1:151565936-152018664	rs4845604 G>A	3.52e-16^C	1.19 (1.14-1.25)^C	G	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4845604	UC	024	1.58e-11	1.19	G
rs4845604	IBD	017	9.41e-11	1.14	G
rs4845604 G>A	CRO	021	1.88e-06^C	1.11 (1.05-1.16)^C	G

Genes

Protein-coding Genes S100A10 C2CD4D RORC RIIAD1 LINGO4 OAZ3 THEM5 THEM4 TDRKH TUFT1 CELF3 SNX27 MRPL9
Non-coding Genes KRT8P28 AL450992.2 RP11-98D18.1 RP11-98D18.17 RP11-98D18.2 RP11-98D18.15 AL450992.6 RP11-404E16.1 Y_RNA RNU6-662P RP11-98D18.7 RNU6-1062P RP11-98D18.3 RP11-98D18.16 AL591893.1 RP11-98D18.9
Protein Coding Genes +/-0.5Mb of Region PSMD4 TNFAIP8L2 PI4KB GABPB2 TMOD4 LYSMD1 ZNF687 VPS72 RFX5 MLLT11 PSMB4 CDC42SE1 SCNM1 SELENBP1 CGN SEMA6C PIP5K1A POGZ AL135842.1 S100A11 FLG CRCT1 RPTN HRNR LCE5A TCHHL1 CRNN FLG2 TCHH LCE3C
Non-coding Genes +/-0.5Mb of Region RP11-126K1.8 RP11-68I18.2 RP11-126K1.9 SNORA44 RP11-68I18.10 RP11-74C1.2 RP11-126K1.2 RNY4P25 MIR554 RN7SL444P RP11-126K1.6 RP11-74C1.4 AL589986.2 PUDPP2 RP11-107M16.2 SPTLC1P4 HMGN3P1 FLG-AS1

UC 1q23.3

chr1:160727284-160979324

rs4656958

SLAMF7 CD244 ITLN1 F11R USF1 ARHGAP30 SLAMF1 CD48

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1q23.3	chr1:160727284-160979324	rs4656958 G>A	6.95e-08^C	1.08 (1.03-1.11)^C	G	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4656958 G>A	IBD	017	6.80e-09^C	1.06 (1.03-1.1)^C	G
rs4656958 G>A	UC	024	6.95e-08^C	1.08 (1.03-1.11)^C	G

Genes

Protein-coding Genes CD244 ITLN1 LY9 SLAMF7 ITLN2
Non-coding Genes RP11-404F10.5 RP11-544M22.1 RP11-312J18.5 RP11-312J18.6 RP11-312J18.3 RP11-312J18.7 RP11-404F10.6
Protein Coding Genes +/-0.5Mb of Region NCSTN COPA SLAMF1 SLAMF6 CD48 CD84 NHLH1 RP11-574F21.3 VANGL2 DCAF8 PEX19 USP21 DEDD MPZ AL591806.1 UFC1 TSTD1 KLHDC9 NDUFS2 NR1I3 F11R USF1 RP11-544M22.13 SDHC TOMM40L FCER1G B4GALT3 CFAP126 ARHGAP30 NIT1 PVRL4 ADAMTS4 APOA2 PCP4L1 PFDN2 PPOX
Non-coding Genes +/-0.5Mb of Region RP11-574F21.2 RPSAP18 SETP9 SUMO1P3 Y_RNA RNU4-42P RP11-528G1.2 RP11-404F10.2 RRM2P2 RP11-297K8.2 RNU6-481P RP11-122G18.7 ACA64 RP11-544M22.8 MIR5187 RP11-544M22.3 RP11-122G18.9

UC 1q31.3

chr1:197342098-197969200

rs2488389

C1orf53

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1q31.3	chr1:197342098-197969200	rs2488389 G>A	6.79e-06^C	1.11 (1.06-1.15)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2488389	IBD	017	6.14e-10	1.11	A
rs2488389 G>A	UC	024	6.79e-06^C	1.11 (1.06-1.15)^C	A
rs2488389 G>A	CRO	021	8.45e-13^C	1.12 (1.08-1.17)^C	A

Genes

Protein-coding Genes C1orf53 DENND1B LHX9 CRB1
Non-coding Genes MRPS21P3 RP11-448G4.2 RP11-448G4.4 Y_RNA EEF1A1P32 RP11-75C23.1 FAM204BP
Protein Coding Genes +/-0.5Mb of Region F13B ZBTB41 CFHR2 CFHR4 CFHR5 RP4-608O15.3 ASPM NEK7
Non-coding Genes +/-0.5Mb of Region SEPT14P12 RP4-608O15.4 RP11-332L8.1 PRR13P1 AC093419.1

UC 1q32.1

chr1:206709013-206867232

rs3024505

IL19 PIGR IL10 IL20 RASSF5 MAPKAPK2 IL24 FCMR

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1q32.1	chr1:206709013-206867232	rs3024505 G>A	6.94e-41^C	1.28 (1.22-1.34)^C	A	024
1q32.1	chr1:206709013-206867232	rs3024505 G>A	5.76e-17^D	1.25 (1.19-1.32)^D	A	029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs3024505	IBD	017	1.20e-22	1.21	A
rs3024505	UC		4.71e-43	1.25	A
rs3024505	CRO	021	8.14e-12	1.16	A
rs3024505 G>A	UC	029	5.76e-17^D	1.25 (1.19-1.32)^D	A
rs3024505 G>A	T1D	025	6.40e-08^D	1.16^D	G
rs3024505 C>T	T1D	004	1.90e-09^C	1.19 (1.1-1.3)^C	C
rs3024505 G>A	SLE	015	4.00e-08^C	1.19 (1.11-1.28)^C	A
rs3024505 G>A	SLE	047	4.64e-09^C	1.12 (1.11-1.24)^D	A
rs3024505 C>T	CRO	011	1.60e-14^C	1.12 (1.07-1.17)^C	T
rs3024505 G>A	UC	024	6.94e-41^C	1.28 (1.22-1.34)^C	A

Genes

Protein-coding Genes IL20 IL19 IL10 MAPKAPK2
Non-coding Genes Y_RNA
Protein Coding Genes +/-0.5Mb of Region SRGAP2 IKBKE RASSF5 DYRK3 EIF2D C4BPB C1orf116 CD55 YOD1 FCAMR PIGR IL24 PFKFB2 C4BPA FCMR
Non-coding Genes +/-0.5Mb of Region C1orf147 CH17-76K2.6 RP11-421E17.4 RP11-534L20.5 RP11-343H5.6 RP11-534L20.4 RP11-343H5.4 MIR6769B RP11-564A8.4 RP11-164O23.8 RP11-564A8.8 RP11-164O23.7 RP11-164O23.5 C4BPAP2 RP11-6J21.2 C4BPAP1

UC 1p31.1

chr1:70524556-70651887

rs2651244

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1p31.1	chr1:70524556-70651887	rs2651244 G>A	2.29e-08^C	1.08 (1.03-1.11)^C	G	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2651244 G>A	UC	024	2.29e-08^C	1.08 (1.03-1.11)^C	G

Genes

Protein-coding Genes
Non-coding Genes RP11-42O15.2
Protein Coding Genes +/-0.5Mb of Region AL158839.1 HHLA3 LRRC40 ANKRD13C LRRC7 SRSF11 CTH PTGER3 ZRANB2
Non-coding Genes +/-0.5Mb of Region RP11-180O5.2 Metazoa_SRP RP11-181B18.1 RP4-677H15.4 RN7SL242P RP11-42O15.3 RP3-333A15.1 ZRANB2-AS2 CASP3P1 RP11-99H8.1 ZRANB2-AS1 AL360297.1 RP5-952N6.1 MIR186 RP3-333A15.2

UC 2q37.3

chr2:240619922-240716127

rs4676406 rs3749171

GPR35

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2q37.3	chr2:240621671-240716127	rs4676406 T>G	8.32e-11^D	1.14 (1.09-1.18)^D	T	029
2q37.3	chr2:240619922-240712978	rs3749171 C>T	3.07e-21^C	1.17 (1.12-1.22)^C	T	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs3749171	UC	024	1.48e-11	1.17	A
rs3749171	IBD	017	2.00e-11	1.14	A
rs3749171	AS	026	1.19e-08	1.03	T
rs4676406 T>G	UC	029	8.32e-11^D	1.14 (1.09-1.18)^D	T
rs3749171 C>T	CRO	021	3.02e-08^C	1.11 (1.06-1.15)^C	T

Genes

Protein-coding Genes AQP12B GPR35 KIF1A AQP12A
Non-coding Genes RP11-118M12.2 AC011298.2 RP11-118M12.1
Protein Coding Genes +/-0.5Mb of Region OTOS DUSP28 GPC1 RNPEPL1 ANKMY1 CAPN10 MYEOV2 MTERF4 AGXT CROCC2 PASK SNED1 ANO7 C2orf54 PPP1R7
Non-coding Genes +/-0.5Mb of Region AC124861.2 PP14571 AC124861.1 U3 CAPN10-AS1 MIR149 AC005237.4 AC104809.4 AC104809.2 AC005237.2 AC093585.6

UC 2p23.3

chr2:24464482-25234839

rs6545800

ADCY3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2p23.3	chr2:24464482-25234839	rs6545800 C>T	4.05e-06^C	1.07 (1.03-1.11)^C	T	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6545800 C>T	UC	024	4.05e-06^C	1.07 (1.03-1.11)^C	T
rs6545800 C>T	IBD	017	9.40e-15^C	1.11 (1.08-1.14)^C	T
rs6545800 C>T	CRO	021	6.14e-16^C	1.14 (1.10-1.18)^C	T

Genes

Protein-coding Genes CENPO PTRHD1 NCOA1 DNMT3A DNAJC27 ADCY3 EFR3B POMC
Non-coding Genes RN7SL856P RNU6-936P AC013267.1 Y_RNA LINC01381 DNAJC27-AS1 SUCLA2P3 RNA5SP88 SNORD14 RP11-443B20.1
Protein Coding Genes +/-0.5Mb of Region SF3B6 ITSN2 FAM228B C2orf44 UBXN2A RP11-507M3.1 TP53I3 MFSD2B FAM228A FKBP1B PFN4 DTNB ASXL2
Non-coding Genes +/-0.5Mb of Region RNU6-370P HMGN2P20 AC008073.9 AC066692.1 AC009228.1 RPL36AP13 AC008073.7 SCARNA21 RN7SL610P Y_RNA AC012074.2 MIR1301 AC104699.1 AC010150.2

UC 2p16.1

chr2:60706158-61642429

rs7608910

REL KIAA1841 C2orf74 PUS10 AHSA2

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2p16.1	chr2:60706158-61642429	rs7608910 A>G	1.70e-14^D	1.19 (1.14-1.24)^D	G	029
2p16.1	chr2:60706158-61642429	rs7608910 A>G	6.57e-25^C	1.15 (1.11-1.19)^C	G	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7608910	UC		1.25e-23	1.14	G
rs7608910	CRO		2.95e-23	1.13	G
rs7608910	IBD	017	1.49e-18	1.14	G
rs7608910 A>G	UC	024	6.57e-25^C	1.15 (1.11-1.19)^C	G
rs7608910 A>G	CRO	021	6.92e-19^C	1.13 (1.09-1.17)^C	G
rs7608910 A>G	UC	029	1.70e-14^D	1.19 (1.14-1.24)^D	G

Genes

Protein-coding Genes C2orf74 PUS10 PAPOLG KIAA1841 USP34 XPO1 REL AHSA2 PEX13
Non-coding Genes RNU6-612P AC016727.3 LINC01185 AC010733.5 AC016747.1 RP11-355B11.2 RNU6-1145P RP11-373L24.1 RP11-479F13.1 RP11-493E12.2 RP11-416L21.1 RN7SL632P RPL21P33 ATP1B3P1 AC016727.1 RNU4-51P RP11-493E12.3 RP11-493E12.1 AC016747.3 NONOP2 RNA5SP95 RP11-355B11.1 SNORA70B AC016894.1
Protein Coding Genes +/-0.5Mb of Region BCL11A AC107081.1 CCT4 FAM161A COMMD1
Non-coding Genes +/-0.5Mb of Region MIR4432 MIR4432HG RN7SL361P RP11-416L21.2 AC007381.3 RNU1-32P AC007381.1 AC009970.1 AC108039.3 RP11-681L4.1 RP11-681L4.2 AC108039.1 RPS24P7 AC018462.2 AC107081.5 Y_RNA

UC 2q11.2

chr2:101678428-102080305

rs2310173

IL1R2

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2q11.2	chr2:101678428-102080305	rs2310173 G>T	3.17e-12^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2310173	CRO		7.46e-09	1.07	A
rs2310173 C>A	AS	012	4.80e-07^C	1.18 (1.10-1.27)^D	A
rs2310173 G>T	UC	029	3.17e-12^C

Genes

Protein-coding Genes MAP4K4 IL1R2 IL1R1
Non-coding Genes LINC01127
Protein Coding Genes +/-0.5Mb of Region CREG2 TBC1D8 RFX8 CNOT11 RNF149 SLC9A4 IL1RL1 IL18RAP IL18R1 IL1RL2
Non-coding Genes +/-0.5Mb of Region SNORD89 AC092570.4 AC013722.1 AC092570.1 MIR5696 AC092570.2 AC092570.3 FAM183DP SDR42E1P5 AC007278.3 MIR4772 AC007271.3 AC007278.2

UC 2q33.1

chr2:197277486-198096744

rs1016883

RFTN2 PLCL1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2q33.1	chr2:197277486-198096744	rs1016883 C>A	2.87e-08^C	1.1 (1.05-1.15)^C	C	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1016883 C>A	UC	024	2.87e-08^C	1.1 (1.05-1.15)^C	C

Genes

Protein-coding Genes RFTN2 HSPD1 ANKRD44 SF3B1 MOB4 HSPE1-MOB4 PLCL1 BOLL COQ10B HSPE1 MARS2
Non-coding Genes SNORA4 RNU6-1029P AC020550.7 AC010746.3 AC011997.1 NPM1P46 ANKRD44-IT1
Protein Coding Genes +/-0.5Mb of Region GTF3C3 PGAP1 C2orf66
Non-coding Genes +/-0.5Mb of Region RP11-84A12.1 HNRNPA3P15 AC017035.2 AC013264.2 ATP5G2P3 AC109589.1 AC019330.1 AC005235.1 AC019330.2

UC 2q32.3

chr2:190986040-191143008

rs1517352

STAT1 STAT4

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2q32.3	chr2:190986040-191143008	rs1517352 C>A	1.55e-06^C	1.05 (1.02-1.1)^C	C	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1517352	CRO		1.31e-10	1.08	C
rs1517352	UC		2.10e-09	1.08	C
rs1517352 C>A	IBD	017	3.28e-11^C	1.08 (1.04-1.11)^C	C
rs1517352 C>A	CRO	021	1.93e-10^C	1.1 (1.05-1.14)^C	C
rs1517352 C>A	UC	024	1.55e-06^C	1.05 (1.02-1.1)^C	C

Genes

Protein-coding Genes STAT4 STAT1
Non-coding Genes AC067945.2 RNU6-959P AC067945.3 AC067945.4
Protein Coding Genes +/-0.5Mb of Region NEMP2 MFSD6 GLS NAB1 MYO1B
Non-coding Genes +/-0.5Mb of Region AC093388.3 AC006460.2 RN7SKP179 AC005540.1 AC005540.3 HMGB1P27 AC092614.2 AC068056.1 RP11-317J9.1 AC092614.1 RNU6-1045P

UC 2q35

chr2:218018463-218395928

rs11676348 rs2382817

CTDSP1 CXCR1 CXCR2 ARPC2 SLC11A1 AAMP TMBIM1 PNKD

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2q35	chr2:218074907-218395928	rs2382817 C>A	5.38e-08^C	1.05 (1.02-1.09)^C	A	024
2q35	chr2:218018463-218377795	rs11676348 C>T	1.25e-10^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11676348	UC		2.08e-09	1.08	A
rs11676348	CRO		3.65e-09	1.07	A
rs2382817	UC		1.54e-08	1.07	A
rs2382817 C>A	CRO	021	1.28e-07^C	1.09 (1.05-1.12)^C	A
rs11676348 C>T	UC	029	1.25e-10^C
rs2382817 C>A	UC	024	5.38e-08^C	1.05 (1.02-1.09)^C	A
rs2382817 C>A	IBD	017	3.70e-12^C	1.07 (1.04-1.10)^C	A

Genes

Protein-coding Genes RUFY4 ARPC2 SLC11A1 CXCR1 PNKD CXCR2 TMBIM1 GPBAR1 AAMP CATIP
Non-coding Genes CATIP-AS2 CATIP-AS1 CXCR2P1 AC021016.7 MIR6513 HMGB1P9 AC097483.1 RP11-378A13.1 MIR6810
Protein Coding Genes +/-0.5Mb of Region DIRC3 TNS1 WNT6 BCS1L RQCD1 PRKAG3 WNT10A USP37 ZNF142 STK36 CYP27A1 TTLL4 VIL1 PLCD4 RNF25 CTDSP1
Non-coding Genes +/-0.5Mb of Region AC010886.2 RPL7L1P9 MIR6809 AC010136.2 RP11-548H3.1 RP11-459I19.1 RN7SKP38 RPL23AP31 RP11-378A13.2 RNU6-136P MIR26B

UC 2q33.1

chr2:198492027-198792296

rs17229285

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2q33.1	chr2:198492027-198792296	rs17229285 T>C	1.73e-13^C	1.12 (1.08-1.16)^C	C	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs17229285	UC	024	3.59e-10	1.12	G
rs17229285 T>C	IBD	017	3.76e-06^C	1.06 (1.03-1.09)^C	C

Genes

Protein-coding Genes PLCL1
Non-coding Genes AC019330.1 AC068121.1 AC019330.2
Protein Coding Genes +/-0.5Mb of Region SATB2
Non-coding Genes +/-0.5Mb of Region AC109589.1 AC005235.1 RNU7-147P AC018717.1 AC018717.2

UC 2q24.2

chr2:162104363-162502867

rs2111485

IFIH1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2q24.2	chr2:162104363-162502867	rs2111485 G>A	1.93e-08^C	1.09 (1.05-1.12)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2111485	T1D	025	3.81e-18	1.18	G
rs2111485	UC		2.11e-10	1.09	A
rs2111485 G>A	VIT	036	4.91e-15^C	1.3^D	G
rs2111485 G>A	UC	024	1.93e-08^C	1.09 (1.05-1.12)^C	A
rs2111485 G>A	SLE	047	1.27e-11^C	1.15 (1.2-1.11)^D	G
rs2111485 G>A	IBD	017	2.52e-07^C	1.07 (1.04-1.10)^C	A

Genes

Protein-coding Genes IFIH1 GCA GCG FAP KCNH7
Non-coding Genes RNA5SP109 AC007750.1 AC007750.5
Protein Coding Genes +/-0.5Mb of Region DPP4 SLC4A10
Non-coding Genes +/-0.5Mb of Region TIMM8AP1 AC008063.2 AC008063.3 AC092841.1 RPEP5 AC092841.2 EIF3EP2 AC007740.1

UC 3p21.1

chr3:52314348-53145738

rs9847710

ITIH4 PRKCD

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
3p21.1	chr3:52314348-53145738	rs9847710 T>C	1.05e-08^C	1.06 (1.03-1.10)^C	C	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs9847710 T>C	UC	024	1.05e-08^C	1.06 (1.03-1.10)^C	C

Genes

Protein-coding Genes TNNC1 PBRM1 RFT1 ITIH3 ITIH4 ITIH1 GLT8D1 NEK4 SMIM4 DNAH1 SEMA3G RP11-894J14.5 NISCH RP5-966M1.6 SPCS1 TMEM110 TMEM110-MUSTN1 STAB1 GNL3 PHF7 MUSTN1 NT5DC2 BAP1 SFMBT1
Non-coding Genes SNORD19B RP5-966M1.5 RNU6ATAC16P RP5-966M1.4 ITIH4-AS1 RP11-168J18.6 RP5-966M1.7 RP11-894J14.2 SNORD19 RNU6-856P SNORD19 SNORD69 SNORD19B SNORD19 RP11-5O17.1 SERBP1P3 MIR8064
Protein Coding Genes +/-0.5Mb of Region IQCF2 PCBP4 IQCF3 TLR9 ABHD14A WDR82 GLYCTK ACY1 RP11-330H6.5 RRP9 TWF2 ABHD14B RPL29 ABHD14A-ACY1 POC1A PPM1M ALAS1 IQCF1 DUSP7 PARP3 GPR62 IQCF5 PRKCD CACNA1D TKT DCP1A
Non-coding Genes +/-0.5Mb of Region IQCF4 MIR135A1 RN7SL504P RP11-155D18.13 IQCF5-AS1 RP11-330H6.6 GLYCTK-AS1 ALDOAP1 RP11-155D18.12 RP5-1157M23.2 MIRLET7G SNORD63 RP11-72H11.1 Y_RNA SNORA26 SNORD38

UC 3p21.31

chr3:48456895-50711580

rs3197999 rs9822268

GPX1 BSN UBA7 USP4 AMIGO3 IP6K2 MST1R IP6K1 GMPPB MST1 PFKFB4 UCN2 APEH

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
3p21.31	chr3:48456895-50711580	rs9822268 G>A	1.60e-17^D	1.21 (1.16-1.26)^D	A	029
3p21.31	chr3:48465783-50711580	rs3197999 G>A	5.60e-36^C	1.21 (1.16-1.25)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs3197999	UC	024	1.30e-22	1.21	A
rs9822268	CRO		8.98e-33	1.16	A
rs3197999	UC		2.24e-37	1.19	A
rs9822268	IBD	017	8.18e-25	1.17	A
rs9822268 G>A	UC	029	1.60e-17^D	1.21 (1.16-1.26)^D	A
rs3197999 G>A	PSC	032	2.45e-26^D	1.33 (1.26-1.40)^D	A
rs3197999 G>A	CRO	011	6.17e-17^D	1.22 (1.16-1.27)^D	A
rs3197999 G>A	CRO	021	5.31e-29^C	1.16 (1.12-1.20)^C	A

Genes

Protein-coding Genes UCN2 IMPDH2 GNAI2 AMIGO3 TUSC2 CCDC36 COL7A1 SLC38A3 CISH IP6K2 NCKIPSD PFKFB4 MON1A MST1 HYAL2 RBM5 CDHR4 IP6K1 SHISA5 HYAL1 ATRIP DAG1 RHOA RNF123 IFRD2 GNAT1 MST1R LSMEM2 CELSR3 NPRL2 DOCK3 USP4 KLHDC8B P4HTM AMT HYAL3 C3orf62 ATRIP BSN PRKAR2A NICN1 C3orf84 HEMK1 ZMYND10 RBM6 QRICH1 USP19 TREX1 ARIH2 WDR6 XXcos-LUCA11.5 TMEM89 GMPPB RASSF1 C3orf18 FAM212A CYB561D2 CAMKV UBA7 ARIH2OS SLC26A6 QARS UQCRC1 SEMA3F TMEM115 CCDC71 LAMB2 APEH SEMA3B MAPKAPK3 DALRD3 GPX1 NAT6 NDUFAF3 SLC25A20 TCTA CACNA2D2 TRAIP
Non-coding Genes RP11-3B7.7 MIR6823 MIR4793 CYB561D2 MIR4787 MIR425 RHOA-IT1 CTD-2330K9.2 ZMYND10-AS1 COX6CP14 AC134772.1 AC141002.1 Metazoa_SRP AC099668.5 AC139451.2 RP11-804H8.6 PRKAR2A-AS1 MIR6872 MIR5193 MIR711 RP13-131K19.1 RP13-131K19.2 MIR6890 MIR5787 RP11-3B7.1 RP11-804H8.7 MIR566 BSN-AS2 RP13-131K19.7 AC099668.1 AC139451.1 RN7SL217P ACTBP13 SEMA3B-AS1 RP13-131K19.6 RP11-694I15.7 XXcos-LUCA16.1 RN7SL182P RASSF1-AS1 RNA5SP130 RP11-572O6.1 RP13-1056D16.2 BSN-AS1 CTD-2330K9.3 SEMA3F-AS1 U73166.2 RNA5SP131 RP11-804H8.5 CELSR3-AS1 MIR6824 MIR4271 Y_RNA RBM5-AS1 MIR191
Protein Coding Genes +/-0.5Mb of Region MAP4 CDC25A PLXNB1 ZNF589 SPINK8 CAMP TMA7 NME6 FBXW12 CCDC51
Non-coding Genes +/-0.5Mb of Region AC124916.1 RP11-1029M24.1 NDUFB1P1 FCF1P2 RP11-24C3.2 RP11-1029M24.4 RN7SL321P VPS26BP1 RN7SL664P RNU7-128P Y_RNA MIR4443 MIR2115 AC124916.2 SNRPFP4 MRPS18AP1 ZNF652P1 RP11-646D13.1 AC144634.1 ST13P14

UC 4q24

chr4:102467408-103091883

rs3774959

MANBA NFKB1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
4q24	chr4:102467408-103091883	rs3774959 G>A	3.66e-12^C	1.12 (1.08-1.16)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs3774959 G>A	UC	024	3.66e-12^C	1.12 (1.08-1.16)^C	A

Genes

Protein-coding Genes UBE2D3 MANBA SLC9B1 BDH2 SLC9B2 NFKB1 CISD2
Non-coding Genes AF213884.3 LRRC37A15P RNU7-151P KRT8P46 AF224669.3 RP11-10L12.2 AC083826.1 ACTR3BP4 AF213884.2 RP11-10L12.1 PABPC1P7 RP11-10L12.4
Protein Coding Genes +/-0.5Mb of Region BANK1 SLC39A8 TACR3 CENPE
Non-coding Genes +/-0.5Mb of Region MTND5P5 RN7SL728P AF213884.1 RP11-498M5.2 AP002022.1 RP11-499E18.1 DDX3P3 RP11-297P16.4 RP11-328K4.1 RP11-297P16.3

UC 4q13.3

chr4:73859603-74142734

rs2472649

CXCL8 PF4 CXCL3 CXCL6 CXCL5 CXCL2 PF4V1 CXCL1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
4q13.3	chr4:73859603-74142734	rs2472649 G>A	2.57e-08^C	1.12 (1.06-1.19)^C	G	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2472649 G>A	IBD	017	4.15e-07^C	1.1 (1.04-1.15)^C	G
rs2472649 G>A	UC	024	2.57e-08^C	1.12 (1.06-1.19)^C	G

Genes

Protein-coding Genes CXCL3 CXCL2 PF4 CXCL5 MTHFD2L CXCL1 PPBP
Non-coding Genes HNRNPA1P55 RN7SL218P RP11-629B11.4 PPBPP2 CXCL1P
Protein Coding Genes +/-0.5Mb of Region AFP CXCL6 AFM ALB CXCL8 RASSF6 PF4V1 EPGN AREG EREG
Non-coding Genes +/-0.5Mb of Region PPBPP1 RP11-622A1.2 AC112518.3 RP11-447E20.1 RP11-622A1.1 AC142293.3 AC097470.1 RP11-629B11.5 RP11-727M10.1

UC 4q27

chr4:122017479-122644147

rs17388568 rs7657746

IL21 ADAD1 IL2

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
4q27	chr4:122041392-122644147	rs17388568 G>A	9.49e-07^D	1.12 (1.07-1.17)^D	A	029
4q27	chr4:122017479-122644147	rs7657746 A>G	1.79e-09^C	1.12 (1.09-1.18)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7657746	CRO		2.39e-09	1.09	A
rs7657746	UC		5.27e-10	1.10	A
rs17388568	CEL	009	2.74e-08	1.12	A
rs17388568	T1D	025	1.06e-09	1.13	A
rs7657746	IBD	017	9.52e-11	1.12	A
rs7657746	UC	024	8.33e-09	1.13	A
rs17388568 G>A	T1D	005	3.27e-06^D	1.26 (1.11-1.42)^D	A
rs17388568 G>A	T1D	039	2.94e-04^C	1.27 (1.15-1.39)^D	A
rs17388568 G>A	UC	029	9.49e-07^D	1.12 (1.07-1.17)^D	A
rs7657746 A>G	CRO	021	1.01e-09^C	1.11 (1.06-1.15)^C	A

Genes

Protein-coding Genes KIAA1109 IL2 IL21 ADAD1
Non-coding Genes AC097533.1 RN7SL335P IL21-AS1
Protein Coding Genes +/-0.5Mb of Region TMEM155 CCNA2 EXOSC9 BBS7 ANXA5 TRPC3 FGF2 NUDT6 SPATA5 BBS12
Non-coding Genes +/-0.5Mb of Region RP11-63B13.1 PP12613 AC021205.1 CETN4P RP11-170N16.2 RP11-170N16.3 AC021205.2 RP11-170N16.1 AC109357.1

UC 5p15.2

chr5:10667329-10839728

rs267939

DAP

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5p15.2	chr5:10667329-10839728	rs267939 T>C	6.01e-12^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs267939 T>C	UC	029	6.01e-12^C

Genes

Protein-coding Genes DAP
Non-coding Genes CTD-2154B17.3 CTD-2154B17.1 CTD-2154B17.4 CTD-2154B17.2
Protein Coding Genes +/-0.5Mb of Region CCT5 ANKRD33B FAM173B CMBL MARCH6 ROPN1L CTNND2
Non-coding Genes +/-0.5Mb of Region CTD-2199O4.3 Y_RNA CTD-2256P15.2 LINC01513 CTD-2256P15.5 CTD-2256P15.3 RP11-54F2.1 CTD-2199O4.5 CTD-2199O4.6 CTD-2256P15.4 AC012640.1 RPL30P7 RP11-54F2.8 RP11-1C1.5 MIR6131 CTD-2199O4.4 RP11-1C1.6 RP11-54F2.9 ANKRD33B-AS1 RP11-215G15.4 RP11-1C1.4 CTD-2199O4.7 CTD-2256P15.1 Y_RNA ROPN1L-AS1 RNU6-429P

UC 5q31.3

chr5:142033064-142260854

rs6863411

SPRY4 NDFIP1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5q31.3	chr5:142033064-142260854	rs6863411 T>A	9.87e-06^C	1.08 (1.03-1.11)^C	T	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6863411	CRO	021	2.67e-08	1.10	T
rs6863411	CRO		1.87e-14	1.10	T
rs6863411 T>A	IBD	017	1.25e-12^C	1.09 (1.05-1.12)^C	T
rs6863411 T>A	UC	024	9.87e-06^C	1.08 (1.03-1.11)^C	T

Genes

Protein-coding Genes NDFIP1
Non-coding Genes CTC-463A16.1 AC005740.4
Protein Coding Genes +/-0.5Mb of Region GNPDA1 DIAPH1 ARAP3 RELL2 PCDH12 FCHSD1 HDAC3 PCDH1 RNF14 KIAA0141 SPRY4 FGF1
Non-coding Genes +/-0.5Mb of Region AC005753.1 AC005740.3 AC005740.6 AC008781.7 CTD-2024I7.1 AC005740.5 CTD-2024I7.13 AC005592.3 AC005215.1 SPRY4-IT1_2 SPRY4-IT1 AC005592.1 AC005592.2 SPRY4-IT1_1 RPS12P10

UC 5p15.33

chr5:490122-717906

rs11739663

SLC9A3 EXOC3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5p15.33	chr5:490122-717906	rs11739663 T>C	1.81e-08^C	1.08 (1.03-1.11)^C	T	024
5p15.33	chr5:490122-717906	rs11739663 T>C	2.80e-08^D	1.15 (1.09-1.2)^D	T	029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11739663 T>C	UC	029	2.80e-08^D	1.15 (1.09-1.2)^D	T
rs11739663 T>C	UC	024	1.81e-08^C	1.08 (1.03-1.11)^C	T

Genes

Protein-coding Genes SLC9A3 TPPP ZDHHC11B CEP72
Non-coding Genes MIR4456 RP11-310P5.2 RP11-310P5.1 CTD-2589H19.6
Protein Coding Genes +/-0.5Mb of Region PLEKHG4B PDCD6 AHRR SDHA LRRC14B EXOC3 CCDC127 NKD2 SLC6A19 BRD9 SLC12A7 ZDHHC11 TRIP13
Non-coding Genes +/-0.5Mb of Region CTD-2228K2.1 RP11-811I15.1 CTD-2083E4.5 CTD-2228K2.2 EXOC3-AS1 CTD-2083E4.7 AC021087.1 PP7080 CTD-2083E4.4 CTD-2231H16.1 Y_RNA CTD-2083E4.6 CTD-2228K2.7 RP11-43F13.4 CTD-3080P12.3 RP11-43F13.3 BRD9P2 SPCS2P3 MIR4635 RP11-661C8.2 RP11-661C8.3

UC 5q31.1

chr5:132075186-132658977

rs2188962

IRF1 IL4 CSF2 IL5 PDLIM4 SLC22A5 IL13 IL3 ACSL6 SLC22A4

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5q31.1	chr5:132075186-132658977	rs2188962 C>T	3.81e-09^C	1.08 (1.04-1.12)^C	T	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2188962	CRO	021	2.30e-33	1.22	A
rs2188962 C>T	IBD	017	3.74e-37^C	1.16 (1.13-1.19)^C	T
rs2188962 C>T	UC	024	3.81e-09^C	1.08 (1.04-1.12)^C	T

Genes

Protein-coding Genes SLC22A4 CSF2 IRF1 IL13 C5orf56 P4HA2 PDLIM4 RAD50 SLC22A5 IL5
Non-coding Genes snoZ6 AC063976.2 AC063976.3 RP11-89G4.1 TH2LCRR MIR3936 AC063976.7 AC116366.6 AC063976.1 P4HA2-AS1 AC034220.3 Y_RNA AC116366.5
Protein Coding Genes +/-0.5Mb of Region FNIP1 CTB-127M13.1 RAPGEF6 MEIKIN CTC-432M15.3 ACSL6 IL3 CCNI2 SHROOM1 SOWAHA UQCRQ ZCCHC10 KIF3A LEAP2 IL4 SEPT8 HSPA4 GDF9 AFF4
Non-coding Genes +/-0.5Mb of Region AC005593.2 AC034228.2 AC034228.4 AC034228.3 AC004775.5 AC010240.2 Y_RNA RP11-485M7.2 AC004237.1 ATP6V0E1P1 CTC-350I8.1 RP11-485M7.3 RNA5SP192 Y_RNA AC010240.3 RP11-485M7.1

UC 5p13.1

chr5:40286865-40626651

rs11742570 rs6451493

PTGER4

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5p13.1	chr5:40286865-40626651	rs11742570 C>T	1.36e-10^C	1.08 (1.04-1.12)^C	C	024
5p13.1	chr5:40286865-40626651	rs6451493 T>G	2.80e-09^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11742570	CRO		3.66e-87	1.28	G
rs11742570	MS	030	2.08e-08	1.10	G
rs11742570	CRO	021	1.72e-50	1.29	G
rs11742570 C>T	UC	024	1.36e-10^C	1.08 (1.04-1.12)^C	C
rs6451493 T>G	UC	029	2.80e-09^C
rs11742570 C>T	CRO	011	7.08e-36^D	1.33 (1.27-1.39)^D	C
rs11742570 C>T	IBD	017	3.46e-59^C	1.19 (1.16-1.23)^C	C

Genes

Protein-coding Genes
Non-coding Genes AC108105.1
Protein Coding Genes +/-0.5Mb of Region RPL37 C7 PTGER4 MROH2B CARD6 PRKAA1 AC008810.1 TTC33
Non-coding Genes +/-0.5Mb of Region GCSHP1 LINC00604 RNU1-150P KRT18P56 LINC00603 RNU7-161P SNORD72 SNORA57 RP11-301A5.2 SNORA63

UC 5q33.1

chr5:150658703-151012930

rs11741861

TNIP1 IRGM

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5q33.1	chr5:150658703-151012930	rs11741861 A>G	1.05e-07^C	1.15 (1.08-1.22)^C	G	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11741861	CRO		5.88e-44	1.33	G
rs11741861	CRO	021	2.76e-22	1.32	G
rs11741861 A>G	IBD	017	2.31e-26^C	1.25 (1.19-1.31)^C	G
rs11741861 A>G	UC	024	1.05e-07^C	1.15 (1.08-1.22)^C	G

Genes

Protein-coding Genes SYNPO DCTN4 IRGM MYOZ3 ZNF300 RBM22 SMIM3
Non-coding Genes CTC-311G1.1 CTC-311G1.2 ZNF300P1 CTC-345K18.2
Protein Coding Genes +/-0.5Mb of Region CD74 ARSI CDX1 NDST1 TCOF1 RPS14 SLC6A7 CAMK2A SLC36A3 FAT2 GM2A SLC36A2 CCDC69 SLC36A1 GPX3 AC008641.1 ANXA6 TNIP1
Non-coding Genes +/-0.5Mb of Region CTB-140J7.2 CTC-367J11.1 AC011372.1 CTC-224D3.1 AC034205.1 CTB-23I7.3 CTB-17P3.4 CTC-251D13.1 CTB-23I7.1 CTB-23I7.2 RNA5SP197

UC 5p13.2

chr5:35795636-36035028

rs3194051

IL7R

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5p13.2	chr5:35795636-36035028	rs3194051 A>G	4.22e-08^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs3194051 A>G	UC	029	4.22e-08^C

Genes

Protein-coding Genes UGT3A1 CAPSL IL7R SPEF2 UGT3A2
Non-coding Genes RP11-79C6.3 RP11-79C6.1 RP11-79C6.2 CTD-2113L7.1
Protein Coding Genes +/-0.5Mb of Region SKP2 RANBP3L NADK2 LMBRD2
Non-coding Genes +/-0.5Mb of Region U3 RNU7-130P AC027347.1 MIR580 RNA5SP181 RNU6-1305P CTD-2197M16.1 NADK2-AS1

UC 5q35.3

chr5:177079730-177421018

rs12654812

DOK3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5q35.3	chr5:177079730-177421018	rs12654812 G>A	6.67e-08^C	1.08 (1.04-1.11)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs12654812 G>A	UC	024	6.67e-08^C	1.08 (1.04-1.11)^C	A
rs12654812 G>A	IBD	017	1.68e-08^C	1.07 (1.04-1.10)^C	A

Genes

Protein-coding Genes F12 RAB24 SLC34A1 FGFR4 MXD3 NSD1 PRELID1 LMAN2 PFN3 ZNF346 GRK6 RGS14
Non-coding Genes CTD-2301A4.3 PRMT1P1 CTD-2301A4.1
Protein Coding Genes +/-0.5Mb of Region UIMC1 EIF4E1B TSPAN17 GPRIN1 SNCB CDHR2 HK3 UNC5A DBN1 TMED9 FAM153A PRR7 FAM193B PDLIM7 B4GALT7 DDX41 DOK3
Non-coding Genes +/-0.5Mb of Region LINC01574 MIR4281 RP11-375B1.1 RP11-375B1.2 ZNF346-IT1 RP11-1334A24.6 RP11-1101H11.1 OR1X5P RP11-423H2.5 PRR7-AS1 RP11-1334A24.5 RP11-1026M7.2 RP11-423H2.1 RP11-1277A3.3 RP11-1277A3.2 AC106795.1 RP11-1277A3.1 RP11-1026M7.3

UC 5q31.1

chr5:135044841-135190861

rs254560

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5q31.1	chr5:135044841-135190861	rs254560 G>A	2.55e-09^C	1.06 (1.02-1.09)^C	A	024
5q31.1	chr5:135044841-135190861	rs254560 G>A	1.25e-09^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs254560 G>A	IBD	017	1.54e-08^C	1.04 (1.01-1.07)^C	A
rs254560 G>A	UC	024	2.55e-09^C	1.06 (1.02-1.09)^C	A
rs254560 G>A	UC	029	1.25e-09^C

Genes

Protein-coding Genes
Non-coding Genes CTC-276P9.2 C5orf66 CTC-276P9.3
Protein Coding Genes +/-0.5Mb of Region CAMLG SAR1B SEC24A PITX1 C5orf24 TXNDC15 CATSPER3 DDX46 JADE2 PCBD2 H2AFY NEUROG1 DCANP1 TIFAB CXCL14
Non-coding Genes +/-0.5Mb of Region AC006077.3 MTND5P11 MTND4LP30 C5orf66-AS1 AC006077.4 CTC-276P9.4 RNU6-757P RNU6-1311P RNU6-1164P CTB-2L9.1 MTCYBP18 MTND6P4 MTND4P12 MTND3P25 MIR4461 CTB-138E5.1 CTC-203F4.2 C5orf66-AS2 CTC-321K16.1 CTC-321K16.4

UC 5q33.3

chr5:159397971-159460964

rs6871626

IL12B

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5q33.3	chr5:159397971-159460964	rs6871626 C>A	2.39e-22^C	1.15 (1.11-1.20)^C	A	024
5q33.3	chr5:159397971-159460964	rs6871626 C>A	1.11e-21^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6871626	IBD	017	8.82e-28	1.18	A
rs6871626	CRO	021	2.09e-26	1.20	A
rs6871626	UC	024	1.69e-14	1.15	A
rs6871626 C>A	AS	026	3.10e-08^C	1.10^C	A
rs6871626 C>A	UC	029	1.11e-21^C

Genes

Protein-coding Genes
Non-coding Genes AC008697.1 AC008703.1
Protein Coding Genes +/-0.5Mb of Region IL12B EBF1 RNF145 UBLCP1 ADRA1B
Non-coding Genes +/-0.5Mb of Region SNORA68 RNU4ATAC2P CTD-2363C16.1 RP11-175K6.2 AC011376.1 CTD-2363C16.2 CTB-11I22.1 RP11-175K6.1 CTB-11I22.2 AC008703.2 GAPDHP40 AC008691.1 AC011343.1

UC MHC

chr6:32371299-32715138

rs6927022 rs9268853

HLA-DQA2 HLA-DQB1 HLA-DRB1 BTNL2 HLA-DRB5 HLA-DQA1 HLA-DRA

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
MHC	chr6:32371299-32684804	rs9268853 T>C	1.35e-55^D	1.41 (1.33-1.47)^D	T	029
MHC	chr6:32426760-32715138	rs6927022 A>G	4.71e-133^C	1.45 (1.39-1.49)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs9268853	CEL	009	1.19e-59	1.41	T
rs6927022 A>G	UC	024	4.71e-133^C	1.45 (1.39-1.49)^C	A
rs6927022 A>G	IBD	017	3.19e-52^C	1.14 (1.1-1.18)^C	A
rs9268853 T>C	UC	029	1.35e-55^D	1.41 (1.33-1.47)^D	T

Genes

Protein-coding Genes HLA-DRA HLA-DRB1 HLA-DQB1 HLA-DRB5 C6orf10 HLA-DQA1 BTNL2
Non-coding Genes MTCO3P1 HLA-DQB1-AS1 HLA-DRB6 RNU1-61P HLA-DRB9 HCG23
Protein Coding Genes +/-0.5Mb of Region NELFE C4B C4A AL645922.1 STK19 AGER CFB SLC44A4 DXO CYP21A2 TNXB SKIV2L RNF5 AGPAT1 EGFL8 PPT2-EGFL8 PRRT1 C2 GPSM3 PBX2 NOTCH4 PPT2 ATF6B ZBTB12 FKBPL XXbac-BPG116M5.17 EHMT2 HSD17B8 SLC39A7 HLA-DOB RXRB TAP1 TAP2 BRD2 HLA-DMA HLA-DOA HLA-DPA1 RING1 COL11A2 HLA-DQB2 HLA-DQA2 PSMB9 XXbac-BPG181M17.5 XXbac-BPG246D15.9 HLA-DPB1 HLA-DMB PSMB8
Non-coding Genes +/-0.5Mb of Region C4B-AS1 RNU6-603P XXbac-BPG154L12.5 XXbac-BPG154L12.4 CYP21A1P EHMT2-AS1 RNA5SP206 MIR1236 XXbac-BPG300A18.13 HNRNPA1P2 MIR6833 C4A-AS1 TNXA STK19B MIR6721 C2-AS1 PPP1R2P1 HLA-DPA2 XXbac-BPG181M17.6 RNY4P10 HLA-DPA3 PSMB8-AS1 HLA-DPB2 MIR219A1 HLA-DQB3 MIR3135B AL645941.1 COL11A2P1 HCG24 XXbac-BPG254F23.7 RPL32P1 BRD2-IT1 HLA-Z

UC 6q23.3

chr6:137568592-137806067

rs6920220

TNFAIP3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
6q23.3	chr6:137568592-137806067	rs6920220 G>A	1.40e-21^C	1.16 (1.11-1.21)^C	A	024
6q23.3	chr6:137568592-137806067	rs6920220 G>A	8.05e-17^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6920220	UC	024	5.19e-12	1.16	A
rs6920220	IBD	017	4.78e-08	1.10	A
rs6920220 G>A	RA	019	2.30e-13^C	1.20^C	A
rs6920220 G>A	T1D	040	7.26e-06^D	1.12^D	A
rs6920220 G>A	RA	005	1.58e-05^D	1.20 (1.06-1.36)^D	A
rs6920220 G>A	UC	029	8.05e-17^C
rs6920220 G>A	SLE	015	4.00e-07^C	1.17 (1.10-1.25)^C	A
rs6920220 G>A	T1D	025	7.26e-06^D	1.12^D	A

Genes

Protein-coding Genes
Non-coding Genes RP11-95M15.1 RP11-356I2.1 AL357060.1 RP11-95M15.2 Y_RNA
Protein Coding Genes +/-0.5Mb of Region OLIG3 IFNGR1 IL22RA2 PBOV1 PERP ARFGEF3 TNFAIP3
Non-coding Genes +/-0.5Mb of Region BTF3L4P3 RPSAP42 RP11-356I2.4 RP11-240M16.1 RP11-10J5.1

UC 6q21

chr6:111075054-111647042

rs3851228

TRAF3IP2 REV3L FYN

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
6q21	chr6:111075054-111647042	rs3851228 A>T	1.77e-11^C	1.18 (1.10-1.26)^C	T	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs3851228	UC		1.13e-14	1.20	A
rs3851228	CRO		2.76e-08	1.14	A
rs3851228 A>T	IBD	017	1.08e-13^C	1.15 (1.09-1.22)^C	T
rs3851228 A>T	CRO	021	4.02e-07^C	1.14 (1.07-1.21)^C	T
rs3851228 A>T	UC	024	1.77e-11^C	1.18 (1.10-1.26)^C	T

Genes

Protein-coding Genes SLC16A10 KIAA1919 TRAF3IP2 REV3L
Non-coding Genes BRD7P4 RP5-1112D6.8 C6orf3 REV3L-IT1 TRAF3IP2-AS1 RP11-428F8.2 RP5-1112D6.4 FCF1P5 RP3-415N12.1 RNU6-960P RP5-1112D6.7
Protein Coding Genes +/-0.5Mb of Region GTF3C6 CDK19 RPF2 AMD1 TUBE1 FAM229B WISP3 LAMA4 FYN
Non-coding Genes +/-0.5Mb of Region RP11-346C16.6 RNU6-906P RNU6-1115P RP11-346C16.1 RP11-569A2.2 CNN2P9 RP3-418A9.3 RP11-397G5.2 RP11-346C16.2 AL357515.1 SNORA40 GSTM2P1 RNU6-957P AL158035.1 RP1-97J1.2

UC 6q21

chr6:105954686-106115679

rs6911490 rs6568421

PRDM1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
6q21	chr6:105954686-106099497	rs6568421 A>G	6.22e-06^C	1.07 (1.03-1.11)^C	G	024
6q21	chr6:105959511-106115679	rs6911490 C>T	1.01e-08^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6568421 A>G	IBD	017	2.52e-17^C	1.11 (1.07-1.14)^C	G
rs6911490 C>T	UC	029	1.01e-08^C
rs6568421 A>G	CRO	011	4.37e-08^D	1.13 (1.07-1.18)^D	G
rs6568421 A>G	UC	024	6.22e-06^C	1.07 (1.03-1.11)^C	G
rs6568421 A>G	CRO	021	8.24e-20^C	1.14 (1.10-1.18)^C	G

Genes

Protein-coding Genes PRDM1
Non-coding Genes RP1-134E15.3
Protein Coding Genes +/-0.5Mb of Region AIM1 ATG5 RTN4IP1
Non-coding Genes +/-0.5Mb of Region RP3-359N14.2 RP3-359N14.1 RN7SKP211 Y_RNA RP3-335E1.1 Y_RNA RNA5SP211 RNU6-344P RP11-404H14.1 RN7SL47P U4 RNU6-527P

UC 6p23

chr6:14691381-14736360

rs17119

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
6p23	chr6:14691381-14736360	rs17119 A>G	9.37e-07^C	1.05 (1.01-1.11)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs17119 A>G	IBD	017	3.08e-11^C	1.08 (1.03-1.11)^C	A
rs17119 A>G	UC	024	9.37e-07^C	1.05 (1.01-1.11)^C	A
rs17119 A>G	CRO	021	8.51e-09^C	1.08 (1.04-1.12)^C	A
rs17119 A>G	MS	030	1.00e-10^C	1.11^D	A

Genes

Protein-coding Genes
Non-coding Genes RP11-146I2.1
Protein Coding Genes +/-0.5Mb of Region
Non-coding Genes +/-0.5Mb of Region RP11-330A16.1 RP3-448I9.2 LINC01108 RNU6-793P RP3-448I9.1 RP11-359N11.1 RP1-190J20.2 RN7SL332P AL050335.1

UC 6p21.1

chr6:43803265-43855043

rs943072

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
6p21.1	chr6:43803265-43855043	rs943072 T>G	2.37e-10^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs943072 T>G	UC	029	2.37e-10^C

Genes

Protein-coding Genes
Non-coding Genes RP11-344J7.2
Protein Coding Genes +/-0.5Mb of Region XPO5 POLH MRPS18A VEGFA LRRC73 RSPH9 YIPF3 POLR1C DLK2 TJAP1 CRIP3 ABCC10 MAD2L1BP GTPBP2 ZNF318 SLC22A7 C6orf223 RP11-444E17.6 TCTE1 NFKBIE TMEM151B MRPL14 TMEM63B HSP90AB1 SPATS1 SLC35B2 SLC29A1 AARS2 CAPN11
Non-coding Genes +/-0.5Mb of Region RP11-213N20.1 RP3-337H4.8 AL353602.1 RPS2P28 RP3-337H4.6 MIR6780B RPL12P47 RP11-480N24.4 RNU6-1113P RP3-337H4.9 RP1-261G23.7 RP3-337H4.10 RP1-261G23.4 RP1-261G23.5 SCARNA15 RP5-1120P11.4 MIR4647 RP1-302G2.5 AL109615.1 RN7SL811P RP5-1120P11.1 RP5-1120P11.3

UC 7q32.1

chr7:128911686-129137466

rs4728142

TNPO3 IRF5 TSPAN33

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
7q32.1	chr7:128911686-129137466	rs4728142 G>A	1.74e-08^C			029
7q32.1	chr7:128911686-129137466	rs4728142 G>A	4.37e-14^C	1.10 (1.07-1.14)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4728142 G>A	SJO	033	9.75e-17^C	1.29 (1.09-1.52)^D	A
rs4728142 G>A	UC	024	4.37e-14^C	1.10 (1.07-1.14)^C	A
rs4728142 G>A	SLE	037	7.10e-10^D	1.45 (1.37-1.55)^D	A
rs4728142 G>A	UC	029	1.74e-08^C
rs4728142 G>A	IBD	017	1.48e-06^C	1.06 (1.03-1.09)^C	A

Genes

Protein-coding Genes IRF5 TNPO3
Non-coding Genes RP11-309L24.6 RP11-286H14.4 TPI1P2 RP11-128A6.3 RP11-309L24.10 ODCP CYCSP20 RN7SL306P RP11-286H14.2 RP11-286H14.1
Protein Coding Genes +/-0.5Mb of Region HILPDA FLNC CCDC136 FAM71F2 OPN1SW ATP6V1F KCP AC010655.1 CALU FAM71F1 METTL2B AHCYL2 NRF1 SMKR1 SMO STRIP2 TSPAN33
Non-coding Genes +/-0.5Mb of Region RP11-212P7.3 RP11-155G14.6 RP11-274B21.14 RNU6-177P RP11-274B21.4 AC025594.1 RNA5SP243 RP11-155G14.1 RP11-274B21.1 RP11-274B21.13 RP11-274B21.3 RP11-274B21.5 RNA5SP242 RN7SL81P RP11-274B21.2 RP11-274B21.12 RNU7-54P RP11-155G14.5 RP11-212P7.2 RP11-309L24.4 Metazoa_SRP RP11-212P7.1 CICP14 RP11-274B21.10 RP11-274B21.9 IMP3P2 RP11-309L24.2 RP11-448A19.1 RP11-305M3.2 RNY1P11 RP11-286H14.8 RNU1-72P SNRPGP3

UC 7p15.2

chr7:27157700-27280195

rs4722672

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
7p15.2	chr7:27157700-27280195	rs4722672 T>C	2.06e-08^C	1.09 (1.04-1.14)^C	C	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4722672 T>C	UC	024	2.06e-08^C	1.09 (1.04-1.14)^C	C

Genes

Protein-coding Genes HOXA10-HOXA9 HOXA11 HOXA13 EVX1 HOXA7 HOXA10 HOXA9
Non-coding Genes RP1-170O19.14 RP1-170O19.17 HOTTIP_1 MIR196B EVX1-AS HOXA11-AS HOXA11-AS1_4 HOTTIP_4 HOXA11-AS1_2 HOXA10-AS HOXA11-AS1_6 HOXA11-AS1_5 HOTTIP_2 RP1-170O19.24 HOTTIP HOXA11-AS1_1 RPL35P4 HOXA11-AS1_3 HOTTIP_3
Protein Coding Genes +/-0.5Mb of Region HOXA5 HOXA1 HOXA3 HOXA2 HOXA4 HOXA6 SKAP2 HIBADH TAX1BP1
Non-coding Genes +/-0.5Mb of Region HOTAIRM1_5 HOTAIRM1_1 HMGB3P20 HOTAIRM1 HOTAIRM1_4 HOXA-AS3 HOTAIRM1_2 RPL7AP38 TPM3P4 RP1-170O19.22 NHP2P2 RP1-170O19.23 AC004079.1 HOTAIRM1_3 HOXA-AS2 HNRNPA1P73 AC004009.1 AC004009.2 AC073150.6 AC004549.6 AC004009.3 EIF4HP1 PSMC1P2

UC 7q22.1

chr7:99119190-99271073

rs9297145

SMURF1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
7q22.1	chr7:99119190-99271073	rs9297145 A>C	2.65e-08^C	1.08 (1.03-1.12)^C	C	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs9297145 A>C	UC	024	2.65e-08^C	1.08 (1.03-1.12)^C	C
rs9297145 A>C	CRO	021	1.64e-08^C	1.09 (1.05-1.13)^C	C
rs9297145 A>C	IBD	017	8.21e-12^C	1.08 (1.05-1.12)^C	C

Genes

Protein-coding Genes KPNA7 SMURF1
Non-coding Genes MYH16
Protein Coding Genes +/-0.5Mb of Region TMEM130 NPTX2 TRRAP ZNF789 FAM200A ARPC1B CYP3A7 CYP3A5 PDAP1 ATP5J2-PTCD1 ZKSCAN5 ARPC1A CYP3A7-CYP3A51P GS1-259H13.13 PTCD1 ZNF394 ATP5J2 ZNF655 ZSCAN25 BUD31 CPSF4 CYP3A4
Non-coding Genes +/-0.5Mb of Region AC004893.11 AC004893.10 MIR3609 RNU6-393P AC005020.1 AC069294.1 RP11-757A13.1 AC073063.10 GS1-259H13.2 CYP3A51P GS1-259H13.7

UC 7q31.1

chr7:107820310-107964373

rs4380874 rs4510766

DLD

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
7q31.1	chr7:107834421-107964373	rs4510766 A>G	2.00e-16^D	1.2 (1.15-1.27)^D	A	029
7q31.1	chr7:107820310-107964373	rs4380874 C>T	2.07e-26^C	1.14 (1.10-1.18)^C	T	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4510766	UC		3.41e-19	1.12	A
rs4510766	UC	024	9.05e-09	1.11	A
rs4380874	UC		6.43e-25	1.14	A
rs4380874	UC	024	7.45e-13	1.14	A
rs4510766 A>G	UC	029	2.00e-16^D	1.2 (1.15-1.27)^D	A
rs4380874 C>T	IBD	017	7.13e-17^C	1.07 (1.04-1.10)^C	T

Genes

Protein-coding Genes LAMB1 DLD
Non-coding Genes CTB-13F3.1
Protein Coding Genes +/-0.5Mb of Region SLC26A4 COG5 GPR22 CBLL1 BCAP29 DUS4L SLC26A3 LAMB4 NRCAM
Non-coding Genes +/-0.5Mb of Region snoU109 BANF1P5 PIGCP2 WBP1LP2 CTB-20D2.1 RP4-593H12.1 AC002467.7 SLC26A4-AS1 RNU7-20P U3 AC005048.1 AC007567.1

UC 7q31.2

chr7:117234417-117597881

rs38904

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
7q31.2	chr7:117234417-117597881	rs38904 T>C	1.31e-08^C	1.08 (1.04-1.11)^C	T	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs38904 T>C	UC	024	1.31e-08^C	1.08 (1.04-1.11)^C	T
rs38904 T>C	IBD	017	2.58e-07^C	1.05 (1.02-1.09)^C	T

Genes

Protein-coding Genes CFTR ASZ1 WNT2
Non-coding Genes AC002465.2 AC003045.1 MTCYBP6 AC000111.3 AC006326.3 AC000111.5 MTND4P6 AC000111.4
Protein Coding Genes +/-0.5Mb of Region CAPZA2 MET ST7 CTTNBP2
Non-coding Genes +/-0.5Mb of Region TPM3P1 ST7-OT3_1 ST7-AS2 ST7-AS2_1 AC002542.2 ST7-OT4_4 ST7-OT4_2 ST7-OT4_3 AC106873.4 ST7-OT4 ST7-AS1 MIR6132 ST7-AS1_1 ST7-OT3_2 AC002543.2 Y_RNA RNA5SP239 ST7-OT4_1 ST7-OT3_3 ST7-AS1_2 AC000111.6 AC007568.1 AC003084.2

UC 7p22.3

chr7:2695130-2891602

rs798502

CARD11 TTYH3 GNA12

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
7p22.3	chr7:2695130-2891602	rs798502 T>C	6.09e-17^C	1.12 (1.09-1.18)^C	T	024
7p22.3	chr7:2695130-2891602	rs798502 A>C	2.61e-15^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs798502 A>C	UC	029	2.61e-15^C
rs798502 A>C	IBD	017	1.23e-09^C	1.06 (1.03-1.1)^C	A
rs798502 T>C	UC	024	6.09e-17^C	1.12 (1.09-1.18)^C	T

Genes

Protein-coding Genes GNA12 AMZ1
Non-coding Genes AC006028.11
Protein Coding Genes +/-0.5Mb of Region GRIFIN BRAT1 FTSJ2 EIF3B TTYH3 CHST12 IQCE LFNG NUDT1 SNX8 MAD1L1 SDK1 CARD11
Non-coding Genes +/-0.5Mb of Region MIR4648 RP4-607J2.1 IMMP1LP3 AC004840.8 MIR6836 AC073316.2 RP11-30B1.1 RN7SKP130 AC024028.1 AC004906.3 AC091801.1 AC073316.1

UC 8q24.21

chr8:129468135-129685804

rs1991866

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
8q24.21	chr8:129468135-129685804	rs1991866 C>G	6.74e-06^C	1.04 (1.00-1.08)^C	G	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1991866 C>G	UC	024	6.74e-06^C	1.04 (1.00-1.08)^C	G
rs1991866 C>G	IBD	017	1.65e-09^C	1.05 (1.02-1.08)^C	G
rs1991866 C>G	CRO	021	8.95e-07^C	1.07 (1.03-1.10)^C	G

Genes

Protein-coding Genes
Non-coding Genes CCDC26 MIR3686 RP11-419K12.1
Protein Coding Genes +/-0.5Mb of Region GSDMC FAM49B ASAP1
Non-coding Genes +/-0.5Mb of Region LINC00977 RP11-26E5.1 RN7SKP206 RP11-1057N3.2 RP11-473O4.1 SNORA25 RP11-473O4.4 RP11-473O4.3 RNU7-181P SNORA12 MTRF1LP2 ASAP1-IT2 MIR5194 RP11-473O4.5 RNU6-1255P

UC 9q22.31

chr9:91134438-91402091

rs4743820

NFIL3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
9q22.31	chr9:91134438-91402091	rs4743820 T>C	3.60e-09^C	1.09 (1.04-1.12)^C	T	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4743820 T>C	UC	024	3.60e-09^C	1.09 (1.04-1.12)^C	T
rs4743820 T>C	IBD	017	6.45e-09^C	1.05 (1.02-1.09)^C	T

Genes

Protein-coding Genes AUH
Non-coding Genes RP11-305L7.6 RP11-305L7.3 RP11-305L7.7 LINC00484 RP11-305L7.5
Protein Coding Genes +/-0.5Mb of Region SYK DIRAS2 NFIL3 ROR2
Non-coding Genes +/-0.5Mb of Region RP11-367F23.1 OR7E109P OR7E108P RP11-367F23.2 RP11-305L7.1 MIR3910-1 RP11-440G5.2 PAICSP2

UC 9p24.1

chr9:4944089-5274545

rs10758669

JAK2

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
9p24.1	chr9:4944089-5274545	rs10758669 A>C	2.22e-25^C			029
9p24.1	chr9:4944089-5274545	rs10758669 A>C	6.97e-29^C	1.17 (1.13-1.21)^C	C	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs10758669	CRO		4.18e-34	1.16	C
rs10758669	UC	024	2.99e-17	1.17	C
rs10758669	UC		1.04e-28	1.15	C
rs10758669 A>C	UC	029	2.22e-25^C
rs10758669 A>C	IBD	017	7.88e-45^C	1.17 (1.14-1.21)^C	C
rs10758669 A>C	CRO	011	1.00e-13^D	1.18 (1.13-1.23)^D	C
rs10758669 A>C	CRO	021	1.44e-31^C	1.18 (1.14-1.22)^C	C

Genes

Protein-coding Genes INSL4 JAK2 INSL6
Non-coding Genes MTATP6P11 MTND4P14 TCF3P1 MTND1P11 MTCO3P11 MTND6P5 MTCO2P11 PDSS1P1 RP11-140C18.2 HNRNPA1P41 CSNK1G2P1 IGHEP2 AL158147.1 MTCO1P11 MTND5P14
Protein Coding Genes +/-0.5Mb of Region SLC1A1 SPATA6L RCL1 AK3 CDC37L1 PLPP6 RLN2 CD274 RIC1 RLN1 ERMP1 PDCD1LG2 PLGRKT
Non-coding Genes +/-0.5Mb of Region RP11-6J24.3 CDC37L1-AS1 RP11-307I14.2 AL136231.1 KLF4P1 RP11-125K10.5 ECM1P1 MIR101-2 RP11-12D24.10 RNF152P1 RP11-207C16.4 HMGN2P31 RP11-12D24.6 RP11-574F11.3

UC 9q32

chr9:114715997-114937465

rs4246905

TNFSF15 TNFSF8 TNC

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
9q32	chr9:114715997-114937465	rs4246905 C>T	1.18e-17^C	1.14 (1.09-1.18)^C	C	024
9q32	chr9:114715997-114937465	rs4246905 C>T	5.65e-12^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4246905	CRO		6.81e-23	1.14	G
rs4246905	IBD	017	2.33e-16	1.14	G
rs4246905	UC	024	1.48e-10	1.14	G
rs4246905	CRO	021	2.62e-13	1.15	G
rs4246905	UC		1.04e-15	1.12	G
rs4246905 C>T	UC	029	5.65e-12^C

Genes

Protein-coding Genes TNFSF8 TNFSF15
Non-coding Genes RP11-428F18.2 RP11-78H18.2 AL390240.1
Protein Coding Genes +/-0.5Mb of Region ATP6V1G1 ORM2 ORM1 C9orf91 AKNA COL27A1 DFNB31 DEC1 TNC
Non-coding Genes +/-0.5Mb of Region RP11-402G3.5 RP11-402G3.3 RP11-9M16.2 RP11-402G3.6 Y_RNA RP11-9M16.3 RP11-402G3.4 RP11-445L6.3 RP11-523L1.2

UC 9q34.3

chr9:136243135-136514725

rs10781499

SNAPC4 SDCCAG3 SEC16A INPP5E CARD9 PMPCA

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
9q34.3	chr9:136243135-136514725	rs10781499 G>A	2.62e-19^C			029
9q34.3	chr9:136243135-136514725	rs10781499 G>A	3.90e-28^C	1.16 (1.12-1.20)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs10781499	CRO	021	8.52e-30	1.21	A
rs10781499	UC	024	7.88e-17	1.16	A
rs10781499 G>A	IBD	017	4.38e-56^C	1.19 (1.15-1.22)^C	A
rs10781499 G>A	UC	029	2.62e-19^C

Genes

Protein-coding Genes CR392000.1 INPP5E GPSM1 SEC16A DNLZ NOTCH1 CCDC187 SDCCAG3 SNAPC4 CARD9 PMPCA QSOX2
Non-coding Genes DKFZP434A062 WI2-1959D15.1 C9orf163
Protein Coding Genes +/-0.5Mb of Region LHX3 C9orf69 CAMSAP1 NACC2 UBAC1 KCNT1 MAMDC4 FAM69B ABCA2 RABL6 TMEM141 LCN8 CLIC3 AGPAT2 LCN6 RP11-216L13.16 LCN12 TRAF2 FBXW5 LCN15 LCNL1 C9orf142 RABL6 LCN10 EGFL7 RP11-216L13.17 PHPT1 CCDC183 PTGDS C9orf172 C8G EDF1
Non-coding Genes +/-0.5Mb of Region RP11-432J22.2 RP11-83N9.6 RP11-83N9.5 NALT1 MIR4292 LINC01451 SNORA17A CCDC183-AS1 SNORA17B RP11-216L13.21 RP11-216L13.19 NCLP1 RP11-229P13.25 RP11-229P13.19 MIR4479 SNHG7 SNORA17B ATP6V1G1P3 RP11-229P13.2 PRR31 MIR4673 MIR126 SNORA17 RP11-413M3.4 RP11-216L13.18 RP11-251M1.1 MIR6722 MIR4674 AL590226.1

UC 10q24.2

chr10:99508770-99570210

rs6584283 rs4409764

NKX2-3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
10q24.2	chr10:99508770-99570210	rs6584283 C>T	8.46e-21^D	1.21 (1.16-1.26)^D	T	029
10q24.2	chr10:99508770-99570210	rs4409764 G>T	1.14e-33^C	1.18 (1.14-1.22)^C	T	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4409764	CRO		6.06e-47	1.19	A
rs6584283	CRO		9.30e-46	1.19	A
rs4409764	UC		2.13e-36	1.17	A
rs6584283 C>T	UC	029	8.46e-21^D	1.21 (1.16-1.26)^D	T
rs4409764 G>T	CRO	011	2.29e-20^D	1.22 (1.17-1.27)^D	T
rs4409764 G>T	CRO	021	1.80e-41^C	1.18 (1.14-1.22)^C	T
rs4409764 G>T	UC	024	1.14e-33^C	1.18 (1.14-1.22)^C	T
rs4409764 G>T	IBD	017	1.03e-54^C	1.18 (1.15-1.22)^C	T

Genes

Protein-coding Genes NKX2-3
Non-coding Genes LINC01475 RP11-129J12.1
Protein Coding Genes +/-0.5Mb of Region HPSE2 CNNM1 GOT1 ENTPD7 ABCC2 COX15 CPN1 CUTC SLC25A28 DNMBP
Non-coding Genes +/-0.5Mb of Region ARL5AP2 U7 RPL7P36 RP11-441O15.3 NANOGP6 RP11-483F11.7 DNMBP-AS1 EBAG9P1 RP11-85A1.3

UC 10q21.2

chr10:62581266-62866159

rs10761659

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
10q21.2	chr10:62581266-62866159	rs10761659 G>A	4.95e-17^C	1.12 (1.09-1.16)^C	G	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs10761659	IBD	017	3.20e-26	1.17	G
rs10761659	UC		1.50e-20	1.12	G
rs10761659 G>A	UC	024	4.95e-17^C	1.12 (1.09-1.16)^C	G
rs10761659 G>A	CRO	011	4.37e-22^D	1.23 (1.18-1.28)^D	G
rs10761659 G>A	CRO	005	1.75e-06^D	1.23 (1.05-1.45)^D	G
rs10761659 G>A	CRO	021	6.37e-46^C	1.2 (1.16-1.25)^C	G

Genes

Protein-coding Genes ADO EGR2 ZNF365
Non-coding Genes RP11-436D10.3 ALDH7A1P4
Protein Coding Genes +/-0.5Mb of Region RTKN2 ARID5B JMJD1C NRBF2
Non-coding Genes +/-0.5Mb of Region RN7SL591P AL671972.1 RP11-120C12.3 RNU6-543P RP11-351O1.4 TATDN1P1 RP11-144G16.1

UC 10q23.33

chr10:92439580-92742146

rs7911264

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
10q23.33	chr10:92439580-92742146	rs7911264 C>T	1.19e-07^C	1.09 (1.04-1.12)^C	C	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7911264 C>T	IBD	017	2.98e-08^C	1.06 (1.03-1.1)^C	C
rs7911264 C>T	UC	024	1.19e-07^C	1.09 (1.04-1.12)^C	C

Genes

Protein-coding Genes KIF11 HHEX IDE
Non-coding Genes Y_RNA RN7SL644P AL161652.1 RP11-366I13.3 EIF2S2P3
Protein Coding Genes +/-0.5Mb of Region BTAF1 MARCH5 CPEB3 CYP26C1 EXOC6 CYP26A1
Non-coding Genes +/-0.5Mb of Region Y_RNA AL158040.1 CPEB3_ribozyme RNY3P12 MARK2P9 SNORA25 SDHCP2 EIF4A1P8 NHP2P1 RP11-477L16.2 RP11-348J12.2 RP11-348J12.5 NIP7P1 XRCC6P1

UC 10p11.21

chr10:34887225-35623424

rs11010067 rs12261843

CREM CCNY

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
10p11.21	chr10:34887225-35588558	rs11010067 C>G	4.45e-09^C	1.07 (1.03-1.11)^C	G	024
10p11.21	chr10:34896568-35623424	rs12261843 T>G	7.09e-10^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11010067	CRO	021	1.42e-17	1.16	G
rs12261843 T>G	UC	029	7.09e-10^C
rs11010067 C>G	UC	024	4.45e-09^C	1.07 (1.03-1.11)^C	G
rs11010067 C>G	IBD	017	6.72e-23^C	1.12 (1.08-1.15)^C	G

Genes

Protein-coding Genes CCNY GJD4 CREM CUL2
Non-coding Genes MIR3611 PRDX2P2 RP11-324I22.3 ATP6V1G1P4 RP11-324I22.2 RP11-297A16.4 RP11-425A6.5 RNU6-847P RNU6-794P RNU6-1167P RNU7-77P RP11-297A16.2 RP11-324I22.4 RNU6-193P
Protein Coding Genes +/-0.5Mb of Region PARD3 FZD8
Non-coding Genes +/-0.5Mb of Region TCEB2P4 RP11-8L18.2 PARD3-AS1 SS18L2P1 RP11-8L18.3 RP11-309N24.1 RPL7P37 PCAT5 RP11-810B23.1 MIR4683

UC 11q12.2

chr11:60962649-61068645

rs11230563

PTGDR2 CD5 CD6

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11q12.2	chr11:60962649-61068645	rs11230563 C>T	4.97e-07^C	1.08 (1.03-1.11)^C	C	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11230563 C>T	IBD	017	9.03e-13^C	1.09 (1.05-1.12)^C	C
rs11230563 C>T	CRO	021	1.89e-10^C	1.09 (1.05-1.14)^C	C
rs11230563 C>T	UC	024	4.97e-07^C	1.08 (1.03-1.11)^C	C

Genes

Protein-coding Genes CD6
Non-coding Genes RNU6-933P RP11-881M11.8
Protein Coding Genes +/-0.5Mb of Region MS4A10 MS4A15 TMEM109 SLC15A3 MS4A18 CCDC86 PTGDR2 PRPF19 ZP1 MS4A12 MS4A13 MS4A8 TMEM132A MS4A1 TMEM216 SDHAF2 VWCE TMEM138 VPS37C TKFC CYB561A3 PPP1R32 PGA4 PGA5 SYT7 RP11-286N22.8 CPSF7 LRRC10B PGA3 CD5 DDB1
Non-coding Genes +/-0.5Mb of Region RP11-881M11.1 RP11-881M11.4 RP11-804A23.2 RP11-804A23.1 RP11-804A23.4 RP11-881M11.2 LINC00301 RN7SL23P RP11-286N22.16 RP11-286N22.14 CTD-2331C18.5 RP11-286N22.10 MIR4488 AP000437.3 RP11-286N22.6 RP11-794G24.1

UC 11q23.2

chr11:114386027-114716152

rs561722 rs678170

NXPE1 NXPE4

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11q23.2	chr11:114386027-114704768	rs561722 C>T	5.15e-17^C	1.12 (1.08-1.16)^C	C	024
11q23.2	chr11:114388931-114716152	rs678170 A>G	4.65e-14^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs678170 A>G	UC	029	4.65e-14^C
rs561722 C>T	UC	024	5.15e-17^C	1.12 (1.08-1.16)^C	C
rs561722 C>T	IBD	017	4.61e-08^C	1.05 (1.02-1.09)^C	C

Genes

Protein-coding Genes RBM7 REXO2 NXPE1 NXPE2 C11orf71 C11orf71 NXPE4 RP11-212D19.4
Non-coding Genes snoU13 RP11-172C16.4 RP11-212D19.5 NXPE2P1 RP11-172C16.5
Protein Coding Genes +/-0.5Mb of Region HTR3A NNMT HTR3B ZBTB16 CADM1
Non-coding Genes +/-0.5Mb of Region AP002518.1 AP000908.1 RP11-64D24.2 RP11-64D24.4 ACA59

UC 11q12.1

chr11:58132360-58690335

rs10896794

LPXN CNTF

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11q12.1	chr11:58132360-58690335	rs10896794 T>C	1.17e-07^C	1.08 (1.03-1.11)^C	T	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs10896794 T>C	IBD	017	6.80e-10^C	1.08 (1.04-1.11)^C	T
rs10896794 T>C	UC	024	1.17e-07^C	1.08 (1.03-1.11)^C	T

Genes

Protein-coding Genes LPXN OR5B2 OR10W1 GLYAT OR5B21 ZFP91 OR1S1 OR9Q1 OR5B17 OR9Q2 OR1S2 ZFP91-CNTF OR5B3 OR10Q1 CNTF OR5B12
Non-coding Genes OR9I2P OR5B19P OR5B1P RP11-655C2.3 OR5B15P AP000445.3 OR5BL1P OR5B10P OR1S1 EIF4A2P3 CMB9-55A18.1 AP001350.4 OR10Q2P OR5BC1P AP000435.3 AP000445.1
Protein Coding Genes +/-0.5Mb of Region BTBD18 YPEL4 TMX2 OR6Q1 C11orf31 ZDHHC5 MED19 TMX2-CTNND1 RP11-691N7.6 OR9I1 CLP1 CTNND1 GLYATL1 FAM111A GLYATL1P3 DTX4 FAM111B GLYATL2
Non-coding Genes +/-0.5Mb of Region AP000662.4 MIR130A RNU6-899P AP000662.9 OR5BA1P OR5AZ1P OR6Q1 RP11-659P15.1 RP11-659P15.2 OR9L1P OR9I3P RP11-734C14.2 CYCSP26 VN2R9P OR5BD1P RP11-780O24.2 AP001258.5 GLYATL1P2 GLYATL1P1 TMA16P1 AP001258.4 RP11-142C4.6 RP11-142C4.5 GLYATL1P4 AP000445.2 RP11-142C4.4

UC 11p15.5

chr11:1845142-1946041

rs907611

TNNI2 LSP1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11p15.5	chr11:1845142-1946041	rs907611 G>A	8.85e-10^C	1.08 (1.04-1.12)^C	A	024
11p15.5	chr11:1845142-1946041	rs907611 G>A	1.38e-10^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs907611	UC		1.00e-08	1.08	A
rs907611 G>A	UC	029	1.38e-10^C
rs907611 G>A	UC	024	8.85e-10^C	1.08 (1.04-1.12)^C	A
rs907611 G>A	IBD	017	2.70e-10^C	1.07 (1.04-1.10)^C	A

Genes

Protein-coding Genes TNNT3 LSP1 PRR33
Non-coding Genes MIR7847 AC051649.12 LINC01150 MIR4298
Protein Coding Genes +/-0.5Mb of Region KRTAP5-1 KRTAP5-2 IFITM10 SYT8 AP006285.2 KRTAP5-5 KRTAP5-3 BRSK2 MOB2 TNNI2 DUSP8 KRTAP5-4 KRTAP5-6 CTSD RP11-295K3.1 MRPL23 TH TSSC4 TRPM5 IGF2 INS-IGF2 C11orf21 KCNQ1 INS TSPAN32 CD81 ASCL2
Non-coding Genes +/-0.5Mb of Region AP006285.6 AC068580.5 AC068580.1 FAM99A AP006285.7 RPL36AP39 AC139143.2 FAM99B AC068580.6 AC068580.7 KRTAP5-AS1 H19_3 RPL26P30 MIR4686 RNU6-878P AC124057.5 LINC01219 MRPL23-AS1 H19 MIR483 IGF2-AS CD81-AS1 MIR675 H19_2 H19_1 AC132217.4 Y_RNA

UC 11q13.5

chr11:76324636-76632292

rs2155219

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11q13.5	chr11:76324636-76632292	rs2155219 T>G	1.79e-15^C	1.11 (1.06-1.15)^C	T	024
11q13.5	chr11:76324636-76632292	rs2155219 T>G	5.39e-16^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2155219	UC	024	1.92e-08	1.11	A
rs2155219 T>G	IBD	017	4.24e-36^C	1.15 (1.12-1.19)^C	T
rs2155219 G>T	AA	045	4.10e-08^C	1.21^C	T
rs2155219 G>T	IGE	049	1.40e-18^C	1.20 (1.14-1.24)^D	T
rs2155219 T>G	UC	029	5.39e-16^C
rs2155219 T>G	CRO	021	9.56e-36^C	1.19 (1.15-1.23)^C	T

Genes

Protein-coding Genes EMSY RP11-111M22.2 PRKRIR
Non-coding Genes RP11-672A2.5 RP11-111M22.3 RP11-111M22.5 RP11-672A2.7 Y_RNA RP11-111M22.4 RP11-672A2.6
Protein Coding Genes +/-0.5Mb of Region UVRAG WNT11 ACER3 OMP TSKU CAPN5 LRRC32 MYO7A B3GNT6
Non-coding Genes +/-0.5Mb of Region RP11-263C24.1 RP11-263C24.3 CTD-2011F17.2 RP11-619A14.3 Y_RNA RP11-619A14.2 RNA5SP344 Y_RNA PPP1R1AP1 RP11-672A2.3 RP11-21L23.4 RP11-21L23.2 RP11-21L23.3 RP11-672A2.4 GUCY2EP RP11-672A2.1 AP002498.1 AP001189.4 CTD-2547H18.1

UC 11q13.1

chr11:64081858-64457156

rs559928

FLRT1 TRPT1 CCDC88B RPS6KA4

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11q13.1	chr11:64081858-64457156	rs559928 C>T	1.71e-06^C	1.11 (1.06-1.16)^C	C	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs559928	CRO		3.75e-10	1.10	G
rs559928 C>T	IBD	017	4.19e-11^C	1.1 (1.06-1.14)^C	C
rs559928 C>T	UC	024	1.71e-06^C	1.11 (1.06-1.16)^C	C
rs559928 C>T	CRO	021	4.22e-09^C	1.09 (1.04-1.14)^C	C

Genes

Protein-coding Genes RPS6KA4 KCNK4 FERMT3 BAD GPR137 FLRT1 PLCB3 VEGFB TEX40 TRMT112 ESRRA NUDT22 PRDX5 TRPT1 DNAJC4 CCDC88B MACROD1 FKBP2 STIP1 PPP1R14B
Non-coding Genes KCNK4-TEX40 AP001453.1 AP003774.6 RP11-21A7A.2 RP11-21A7A.4 RP11-783K16.13 RP11-783K16.5 AP003774.5 MIR1237 RP11-21A7A.3 RP11-783K16.14 AP003774.4 AP003774.1 MIR7155 Y_RNA
Protein Coding Genes +/-0.5Mb of Region MARK2 NAA40 RTN3 PLA2G16 AP000721.4 COX8A C11orf95 OTUB1 ATL3 C11orf84 RCOR2 SLC22A12 EHD1 CDC42BPG RASGRP2 MAP4K2 GPHA2 MEN1 NRXN2 ATG2A SLC22A11 PPP2R5B C11orf85 SF1 PYGM
Non-coding Genes +/-0.5Mb of Region RP11-697H9.2 RP11-697H9.5 RN7SL596P RP11-466C23.5 RNU6-1306P RP11-697H9.3 IMMP1LP1 AP000721.1 RNU6-45P MIR194-2HG AP001187.1 AP001462.6 AP001187.11 MIR6750 MIR194-2 MIR6749 AP005273.1 AP001092.4 AP006288.1 MIR192

UC 11q14.2

chr11:87236723-87522249

rs6592362

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11q14.2	chr11:87236723-87522249	rs6592362 G>A	7.84e-08^C	1.10 (1.05-1.14)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6592362 G>A	IBD	017	2.32e-08^C	1.08 (1.05-1.12)^C	A
rs6592362 G>A	UC	024	7.84e-08^C	1.10 (1.05-1.14)^C	A

Genes

Protein-coding Genes TMEM135
Non-coding Genes CTD-2028E8.2 RP11-680L20.1 RP11-777F6.3 PSMA2P1 CTD-2028E8.1
Protein Coding Genes +/-0.5Mb of Region FZD4 PRSS23
Non-coding Genes +/-0.5Mb of Region RP11-648O15.2 OR7E13P RP11-648O15.1 RP11-736K20.6 HNRNPCP8 AP002967.1 AP000654.4 RP11-736K20.5 CTD-2005H7.2 AP000654.5 RP11-736K20.4 OR7E2P RP11-137O10.1 RP11-720D4.2 RP11-665E10.1 RP11-665E10.4 RP11-665E10.5 RP11-665E10.2 RP11-665E10.3 RP11-720D4.3 RNU6-1135P

UC 11q21

chr11:96246567-96484952

rs483905

JRKL MAML2

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11q21	chr11:96246567-96484952	rs483905 G>A	1.21e-08^C	1.06 (1.02-1.10)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs483905	UC		3.16e-10	1.09	A
rs483905 G>A	UC	024	1.21e-08^C	1.06 (1.02-1.10)^C	A

Genes

Protein-coding Genes MAML2 CCDC82 JRKL
Non-coding Genes JRKL-AS1 MIR1260B RNA5SP346
Protein Coding Genes +/-0.5Mb of Region MTMR2 FAM76B CEP57
Non-coding Genes +/-0.5Mb of Region CTD-2564P9.3 AP000870.1 RNA5SP345 RP11-697H10.1 RP11-360K13.1 RP11-360K13.2 RP11-49K4.2

UC 12p13.2

chr12:12384138-12579426

rs11612508

BORCS5

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
12p13.2	chr12:12384138-12579426	rs11612508 A>G	1.06e-08^C	1.09 (1.04-1.13)^C	G	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11612508 A>G	UC	024	1.06e-08^C	1.09 (1.04-1.13)^C	G
rs11612508 A>G	IBD	017	2.56e-06^C	1.06 (1.03-1.09)^C	G

Genes

Protein-coding Genes BORCS5 DUSP16
Non-coding Genes RP11-253I19.3 RP11-158N24.1 RP11-253I19.4
Protein Coding Genes +/-0.5Mb of Region MANSC1 BCL2L14 ETV6 LRP6 CDKN1B DDX47 GPR19 GPRC5D APOLD1 GPRC5A HEBP1 CREBL2 FAM234B
Non-coding Genes +/-0.5Mb of Region RPL23AP66 RP11-757G14.3 RNU6-545P RP11-267J23.4 RP11-267J23.1 LOH12CR2 RNU6-318P RPL21P136 HTR7P1 MIR613 RPL13AP20 RP11-180M15.6 RP11-377D9.3 RP11-377D9.1 RP11-392P7.1 RP11-180M15.4 RP11-59H1.1 RP11-392P7.7 RP11-392P7.6 MIR614 SNORD88 RP11-180M15.3 RP11-180M15.7 STX8P1

UC 12q15

chr12:68036752-68116292

rs7134599

IL22 IFNG IL26

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
12q15	chr12:68036752-68116292	rs7134599 G>A	1.06e-16^D	1.19 (1.14-1.24)^D	A	029
12q15	chr12:68036752-68116292	rs7134599 G>A	8.51e-32^C	1.16 (1.12-1.20)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7134599 G>A	UC	024	8.51e-32^C	1.16 (1.12-1.20)^C	A
rs7134599 G>A	IBD	017	1.22e-22^C	1.10 (1.06-1.13)^C	A
rs7134599 G>A	UC	029	1.06e-16^D	1.19 (1.14-1.24)^D	A

Genes

Protein-coding Genes
Non-coding Genes IFNG-AS1 HNRNPA1P70
Protein Coding Genes +/-0.5Mb of Region DYRK2 IL26 MDM1 RAP1B IL22 IFNG
Non-coding Genes +/-0.5Mb of Region RP11-335O4.3 LINC01479 RP11-542B15.1 RP11-335O4.1 RP11-43N5.2 RP11-43N5.1 GS1-410F4.5 RPL39P28 RP11-71J4.2 RP11-444B24.2 RPSAP12 Metazoa_SRP RP11-81H14.2 RP11-81H14.3 RP11-81H14.4 RP11-81H14.1

UC 12q13.11

chr12:47788458-47837647

rs11168249

VDR

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
12q13.11	chr12:47788458-47837647	rs11168249 T>C	7.78e-09^C	1.08 (1.04-1.12)^C	C	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11168249 T>C	IBD	017	4.59e-08^C	1.05 (1.02-1.08)^C	C
rs11168249 A>G	PSC	032	5.49e-09^D	1.15 (1.10-1.21)^D	G
rs11168249 T>C	UC	024	7.78e-09^C	1.08 (1.04-1.12)^C	C

Genes

Protein-coding Genes HDAC7
Non-coding Genes RP5-1057I20.5 RP5-1057I20.6 RP5-1057I20.2
Protein Coding Genes +/-0.5Mb of Region ENDOU SLC48A1 RAPGEF3 RPAP3 TMEM106C H1FNT SENP1 ASB8 COL2A1 ZNF641 PFKM CCDC184 OR10AD1 VDR
Non-coding Genes +/-0.5Mb of Region RP1-197B17.5 RP5-1057I20.4 RP1-197B17.7 RP11-493L12.6 RP11-493L12.5 RP1-90J4.3 RP3-432I18.1 RP1-90J4.1 RP1-90J4.2 RP1-197B17.4 RP1-197B17.3 SNORA64 CTD-2024F21.1 MIR4494 RP1-228P16.5 RP1-228P16.1 RP1-228P16.7 RP11-370I10.10 MIR6505 RP11-89H19.1 RP1-228P16.9 RP1-228P16.4 PHBP18 RNU6-1203P RP1-228P16.3 RP1-228P16.8 RP11-474C8.5 RP11-474C8.7 RP11-370I10.2 RP11-474C8.8 RP11-370I10.12 RP11-370I10.4 RP11-89H19.2 RP11-474C8.3

UC 13q12.13

chr13:26932960-26990142

rs17085007

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
13q12.13	chr13:26932960-26990142	rs17085007 T>C	2.79e-19^C	1.17 (1.12-1.22)^C	C	024
13q12.13	chr13:26932960-26990142	rs17085007 T>C	9.65e-17^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs17085007 T>C	IBD	017	3.75e-13^C	1.11 (1.07-1.15)^C	C
rs17085007 T>C	UC	029	9.65e-17^C
rs17085007 T>C	UC	024	2.79e-19^C	1.17 (1.12-1.22)^C	C

Genes

Protein-coding Genes
Non-coding Genes RPS21P8
Protein Coding Genes +/-0.5Mb of Region GPR12 WASF3 RPL21 RASL11A USP12 GTF3A MTIF3
Non-coding Genes +/-0.5Mb of Region RPS3AP44 WASF3-AS1 FGFR1OP2P1 USP12-AS2 RP11-428O18.6 SNORA27 RNU6-63P RPS20P32 SNORD102 RP11-144H23.2 USP12-AS1 LINC01079 RNY1P1 LINC00412 AL159977.1 RNU6-70P

UC 13q32.3

chr13:99110747-99432425

rs9557195

GPR18 GPR183

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
13q32.3	chr13:99110747-99432425	rs9557195 T>C	1.68e-07^C	1.1 (1.05-1.15)^C	T	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs9557195 T>C	UC	024	1.68e-07^C	1.1 (1.05-1.15)^C	T
rs9557195 T>C	CRO	021	1.35e-12^C	1.12 (1.08-1.16)^C	T
rs9557195 T>C	IBD	017	2.37e-14^C	1.11 (1.08-1.15)^C	T

Genes

Protein-coding Genes UBAC2 GPR18 GPR183
Non-coding Genes GAPDHP22 H2AFZP3 HMGB3P4 RPS6P23 UBAC2-AS1 RN7SKP9 CCR12P MIR623
Protein Coding Genes +/-0.5Mb of Region DOCK9 SLC15A1 TM9SF2 CLYBL
Non-coding Genes +/-0.5Mb of Region DOCK9-AS2 NUS1P4 RN7SL60P DOCK9-AS1 RP11-155N3.4 RNU6-83P CYCSP35 CALM2P4 RPL7L1P12 AL583784.1 CLYBL-AS2 LINC01039 CFL1P8 MIR4306 RP11-214F16.8 SNORA25 LINC00449 CLYBL-AS1 LINC01232

UC 13q14.11

chr13:40435146-40471356

rs941823

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
13q14.11	chr13:40435146-40471356	rs941823 C>T	2.95e-11^C	1.1 (1.05-1.15)^C	C	024
13q14.11	chr13:40435146-40471356	rs941823 C>T	3.82e-12^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs941823 C>T	UC	024	2.95e-11^C	1.1 (1.05-1.15)^C	C
rs941823 C>T	IBD	017	3.84e-10^C	1.08 (1.03-1.11)^C	C
rs941823 C>T	UC	029	3.82e-12^C

Genes

Protein-coding Genes
Non-coding Genes LINC00598
Protein Coding Genes +/-0.5Mb of Region FOXO1 MRPS31 SLC25A15 ELF1
Non-coding Genes +/-0.5Mb of Region RP11-172E9.2 AL356217.1 RPL17P51 RP11-427J23.1 RNY3P9 LINC00332 LINC00548 RN7SKP2 Metazoa_SRP CYCSP34 MIR320D1 SUGT1P3 RLIMP1 MIR621 TPTE2P5

UC 14q31.3

chr14:87863352-88175959

rs8005161

GALC GPR65

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
14q31.3	chr14:87863352-88175959	rs8005161 C>T	1.71e-08^C	1.14 (1.08-1.21)^C	T	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs8005161	UC		2.80e-09	1.14	A
rs8005161 C>T	IBD	017	2.35e-14^C	1.15 (1.10-1.21)^C	T
rs8005161 C>T	UC	024	1.71e-08^C	1.14 (1.08-1.21)^C	T
rs8005161 C>T	CRO	011	4.20e-18^C	1.23 (1.16-1.31)^C	T
rs8005161 C>T	CRO	021	1.96e-12^C	1.16 (1.09-1.22)^C	T

Genes

Protein-coding Genes GPR65 GALC
Non-coding Genes RNU6-835P RP11-753D20.1 LINC01146 RP11-1152H15.1 RP11-300J18.1 RP11-753D20.4 RP11-753D20.3 RP11-300J18.2 FAM35CP
Protein Coding Genes +/-0.5Mb of Region PTPN21 KCNK10 ZC3H14 EML5 SPATA7
Non-coding Genes +/-0.5Mb of Region RP11-594C13.1 CTD-2007A10.1 RP11-804L24.2 RP11-325D8.1 RP11-507K2.3 RNU4-22P RP11-507K2.2 RP11-507K2.6

UC 15q26.1

chr15:90382489-90725453

rs7495132

CRTC3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
15q26.1	chr15:90382489-90725453	rs7495132 C>T	2.73e-07^C	1.12 (1.06-1.19)^C	C	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7495132 C>T	UC	024	2.73e-07^C	1.12 (1.06-1.19)^C	C
rs7495132 C>T	IBD	017	9.48e-11^C	1.14 (1.09-1.19)^C	C
rs7495132 C>T	CRO	021	6.61e-08^C	1.14 (1.08-1.2)^C	C

Genes

Protein-coding Genes CRTC3 BLM IQGAP1
Non-coding Genes CTD-3065B20.3 LINC01585 CRTC3-AS1 HSPE1P3 NDUFA3P4 RP11-387D10.4 RP11-154B12.3 CTD-3065B20.2
Protein Coding Genes +/-0.5Mb of Region GDPGP1 ARPIN C15orf38-AP3S2 ZNF710 ZNF774 CIB1 RP11-697E2.12 SEMA4B IDH2 AP3S2 RP11-697E2.6 NGRN VPS33B FES FURIN HDDC3 PRC1 UNC45A SV2B RCCD1 MAN2A2
Non-coding Genes +/-0.5Mb of Region RP11-493E3.3 MIR5009 RNU6-1111P GABARAPL3 AC091167.2 GOLGA2P8 CTD-2315E11.1 RPS12P26 RN7SL736P AC091167.1 RP11-617F23.1 RP11-697E2.10 RP11-697E2.11 RP11-697E2.9 U7 RNU7-111P RP11-493E3.2 RN7SL346P TTLL13P MIR3174 GABARAPL3 RP11-617F23.2 RP11-697E2.7 SNORD18 AC068831.10 Y_RNA PRC1-AS1 CTD-3094K11.1 RN7SL363P AC068831.15 AC068831.16 AC068831.11 AC068831.3 AC068831.6 AC068831.17 AC068831.12

UC 15q15.1

chr15:40915941-41573290

rs28374715

ITPKA NUSAP1 NDUFAF1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
15q15.1	chr15:40915941-41573290	rs28374715 A>G	2.43e-08^C	1.09 (1.04-1.12)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs28374715 A>G	UC	024	2.43e-08^C	1.09 (1.04-1.12)^C	A

Genes

Protein-coding Genes ITPKA DLL4 RPAP1 NUSAP1 RTF1 CHP1 TYRO3 LTK OIP5 INO80 EXD1 NDUFAF1 CHAC1
Non-coding Genes ISCA1P4 CYCSP2 RN7SL497P RP11-540O11.6 RP11-540O11.8 TCEB1P2 RP11-540O11.4 RP11-16O9.2 FAM92A1P1 RNU6-1169P RP11-540O11.7 OIP5-AS1
Protein Coding Genes +/-0.5Mb of Region PPP1R14D VPS18 RMDN3 DNAJC17 C15orf62 AC022405.1 GCHFR RAD51 IVD RPUSD2 RHOV ZFYVE19 BAHD1 SPINT1 CHST14 C15orf57 CASC5 SPTBN5 EHD4 JMJD7-PLA2G4B MGA PLA2G4D AC073657.1 JMJD7 PLA2G4E MAPKBP1 PLA2G4B
Non-coding Genes +/-0.5Mb of Region Metazoa_SRP RN7SL376P CTD-2339L15.3 SUMO2P15 CTD-2129N1.1 RP11-532F12.5 RP11-64K12.9 RNU6-516P AC012476.1 AC025166.1 RP11-64K12.8 Metazoa_SRP RP11-64K12.1 RP11-111A22.1 RP11-540O11.1 RAD51-AS1 RP11-107F6.4 EHD4-AS1 CTD-2382E5.2 MIR626 RP11-107F6.3 CTD-2382E5.6 PLA2G4E-AS1 RNA5SP393 RP11-380D11.2 RP11-23P13.6 RP11-23P13.4 MIR4310

UC 16p11.2

chr16:30135944-30542838

rs11150589

ITGAL

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
16p11.2	chr16:30135944-30542838	rs11150589 C>T	6.04e-10^C	1.09 (1.05-1.13)^C	T	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11150589 C>T	UC	024	6.04e-10^C	1.09 (1.05-1.13)^C	T
rs11150589 C>T	IBD	017	1.87e-06^C	1.05 (1.02-1.08)^C	T

Genes

Protein-coding Genes RP11-347C12.3 DCTPP1 AC002310.11 CD2BP2 RP11-347C12.1 ZNF747 SEPT1 ZNF771 CORO1A SEPHS2 BOLA2B SULT1A3 TBC1D10B AC002310.13 SLX1A MYLPF ZNF48 ITGAL ZNF768
Non-coding Genes RP11-347C12.9 RP11-297C4.2 RNU7-61P SNORA42 RP11-347C12.8 RP11-347C12.11 AC106782.1 AC002310.14 AC002310.12 AC002310.10 RP11-347C12.4 SMG1P5 Y_RNA RP11-297C4.1 SLX1A-SULT1A3 RP11-455F5.5 RP11-297C4.3 RP11-347C12.10 MIR4518 RP11-297C4.6 RP11-347C12.12 Y_RNA
Protein Coding Genes +/-0.5Mb of Region SPN QPRT GDPD3 YPEL3 CTD-2574D22.6 PAGR1 CDIPT DOC2A MVP PPP4C SEZ6L2 MAPK3 TBX6 C16orf92 ZG16 PRRT2 C16orf54 HIRIP3 KIF22 AC009133.22 AC009133.23 MAZ INO80E KCTD13 TAOK2 TMEM219 ASPHD1 ALDOA FAM57B ZNF785 STX4 FBXL19 PHKG2 PRR14 CTF1 ZNF629 BCL7C TMEM265 ZNF764 ORAI3 STX1B RNF40 CCDC189 SRCAP HSD3B7 ZNF688 ZNF689 FBRS SETD1A RP11-2C24.9
Non-coding Genes +/-0.5Mb of Region RN7SKP127 CTD-2515O10.5 CA5AP1 AC009133.15 AC009133.24 RP11-455F5.4 RP11-455F5.3 AC009133.21 CTD-2574D22.4 AC009133.17 CTD-2574D22.7 RP11-455F5.6 CTD-2574D22.2 AC009133.12 CTD-2574D22.3 CDIPT-AS1 Metazoa_SRP MIR762 RP11-146F11.2 RNU6-1043P RP11-2C24.4 AC106782.20 RP11-2C24.5 CTF2P RP11-146F11.5 RP11-2C24.7 FBXL19-AS1 RP11-146F11.4 RNU6-416P RP11-146F11.1 RP11-1072A3.4 MIR4519 AC002310.7 AC002310.17 RP11-1072A3.3 AC093249.1 RP11-2C24.3 SNORA30 MIR762HG RP11-146F11.3 AC135048.13

UC 16p12.2

chr16:23720685-23964030

rs7404095

PRKCB

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
16p12.2	chr16:23720685-23964030	rs7404095 C>T	1.15e-08^C	1.06 (1.03-1.11)^C	C	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7404095 C>T	IBD	017	9.68e-10^C	1.06 (1.03-1.09)^C	C
rs7404095 C>T	UC	024	1.15e-08^C	1.06 (1.03-1.11)^C	C

Genes

Protein-coding Genes PRKCB CHP2
Non-coding Genes CTA-345G4.1 CTD-2385L22.2
Protein Coding Genes +/-0.5Mb of Region SCNN1B GGA2 ERN2 PALB2 PLK1 DCTN5 EARS2 COG7 UBFD1 NDUFAB1 CACNG3
Non-coding Genes +/-0.5Mb of Region RN7SKP23 CTD-2270L9.4 CTD-2196E14.6 CTD-2196E14.3 CTD-2196E14.9 CTD-2196E14.5 SUB1P4 CTD-2196E14.7 CTD-2270L9.2 AC002400.1 CTD-2196E14.8 CTD-2385L22.1 SNORA75 CTA-113A6.1 AC008938.1 CTA-113A6.2 RNU7-24P MIR1273H SNORA1 AC004125.3

UC 16q22.1

chr16:68395991-68808992

rs6499188 rs1728785

ZFP90

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
16q22.1	chr16:68395991-68806685	rs1728785 C>A	3.71e-08^C	1.08 (1.03-1.12)^C	C	024
16q22.1	chr16:68397853-68808992	rs6499188 A>G	3.97e-08^D	1.14 (1.09-1.2)^D	A	029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6499188 A>G	UC	029	3.97e-08^D	1.14 (1.09-1.2)^D	A
rs1728785 C>A	UC	024	3.71e-08^C	1.08 (1.03-1.12)^C	C
rs1728785 C>A	IBD	017	4.43e-06^C	1.04 (1.0-1.08)^C	C

Genes

Protein-coding Genes CDH1 CDH3 ZFP90 SMPD3
Non-coding Genes RNA5SP429 RP11-615I2.1 RP11-615I2.6 snoU109 RP11-615I2.2 HSPE1P5 RP11-615I2.3 RP11-71L14.4 RNU4-36P AC099314.1 snoU109 Y_RNA RPL35AP33
Protein Coding Genes +/-0.5Mb of Region ESRP2 LCAT SLC7A6OS DDX28 PSMB10 SLC7A6 DUS2 SLC12A4 CTC-479C5.12 PLA2G15 DPEP3 NFATC3 PRMT7 CTC-479C5.6 PSKH1 CTRL DPEP2 SNTB2 CHTF8 TANGO6 RP11-343C2.11 HAS3 UTP4
Non-coding Genes +/-0.5Mb of Region KARSP3 RP11-96D1.9 RPS12P27 RP11-96D1.10 RP11-96D1.3 RNU6-359P Y_RNA SNORA48 RP11-67A1.4 RP11-96D1.11 RP11-96D1.8 RP11-67A1.2 MIR6773 AC130462.1 RP11-96D1.6 RP11-96D1.7 RP11-71L14.3 RP11-96D1.5 RNU6-1262P RNU4-30P RP11-521L9.2 RPS2P45 RNU6-22P RP11-354M1.2 FTLP14 RP11-123C5.5 RP11-70O5.2 Y_RNA RP11-521L9.1 RNU6-898P Y_RNA U7

UC 16q24.1

chr16:85950449-85990498

rs16940202

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
16q24.1	chr16:85950449-85990498	rs16940202 T>C	5.96e-19^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs16940202 T>C	UC	029	5.96e-19^C

Genes

Protein-coding Genes
Non-coding Genes RP11-542M13.2
Protein Coding Genes +/-0.5Mb of Region COX4I1 C16orf74 GSE1 EMC8 GINS2 IRF8
Non-coding Genes +/-0.5Mb of Region LA16c-352F7.1 RP11-568J23.1 MIR6774 RP11-542M13.3 RP11-118F19.1 RP11-568J23.8 RP11-568J23.7 RN7SL381P RP11-568J23.4 RP11-568J23.6 RP11-568J23.2 RNU1-103P CTD-2542L18.1 RP11-568J23.5 RP11-542M13.1 LINC01082 RP11-805I24.1 RP11-805I24.4 LINC00917 RP11-805I24.3 Y_RNA RP11-158I3.3 RP11-158I3.1 FENDRR RP11-514D23.2 RP11-514D23.3 RP11-514D23.1

UC 17q12

chr17:39219977-40083963

rs2872507 rs12946510

GSDMB PNMT IKZF3 ORMDL3 GSDMA ZPBP2

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
17q12	chr17:39219977-40074859	rs12946510 C>T	3.39e-26^C	1.16 (1.12-1.20)^C	T	024
17q12	chr17:39226421-40083963	rs2872507 G>A	5.44e-11^D	1.15 (1.10-1.19)^D	A	029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs12946510	UC		1.25e-25	1.14	A
rs2872507	T1D	025	2.42e-08	1.11	A
rs2872507	CRO	021	1.98e-16	1.15	A
rs12946510	IBD	017	6.02e-24	1.16	A
rs12946510	UC	024	1.77e-17	1.16	A
rs12946510	CRO		1.97e-24	1.13	A
rs2872507 G>A	CRO	011	1.51e-09^D	1.14 (1.09-1.19)^D	A
rs12946510 G>A	MS	030	2.90e-09^C	1.08^D	A
rs2872507 G>A	RA	014	9.40e-07^C	1.10 (1.05-1.13)^D	A
rs2872507 G>A	RA	019	2.80e-09^C	1.10^C	A
rs2872507 G>A	UC	029	5.44e-11^D	1.15 (1.10-1.19)^D	A

Genes

Protein-coding Genes MIEN1 GRB7 ORMDL3 CSF3 CDK12 STARD3 PNMT GSDMB TCAP FBXL20 NEUROD2 PPP1R1B IKZF3 ZPBP2 THRA PGAP3 MED1 GSDMA PSMD3 ERBB2 LRRC3C MED24 STAC2
Non-coding Genes KRT8P34 AC079199.2 SNORD124 CTB-131K11.1 MIR6884 MIR4728 RNU6-981P RP11-387H17.4 RP11-390P24.1 RP11-387H17.6 AC005288.1 AC087491.2 RP11-690G19.4 RNU6-233P
Protein Coding Genes +/-0.5Mb of Region AC006449.2 PSMB3 ARL5C C17orf98 MLLT6 CISD3 PIP4K2B PCGF2 CACNB1 LASP1 FBXO47 PLXDC1 RPL19 RPL23 CWC25 CASC3 CCR7 NR1D1 IGFBP4 TNS4 RAPGEFL1 WIPF2 TOP2A RARA GJD3 CDC6 MSL1
Non-coding Genes +/-0.5Mb of Region RNA5SP440 CTD-2206N4.5 RP5-906A24.1 RP5-906A24.2 MIR4727 RNU6-866P CTB-58E17.9 LINC00672 AC091178.2 SNORA21 CTB-58E17.5 MIR6779 SNORA21 RPS20P35 RP1-56K13.6 RP1-56K13.5 AC091178.1 LRRC37A11P CTD-2206N4.4 RP1-56K13.2 RP1-56K13.3 CTD-2206N4.1 CTD-2206N4.2 CTD-2267D19.3 Y_RNA RP11-749I16.3 CTD-2267D19.1 CTD-2267D19.4 RNA5SP441 AC068669.1 RPL23AP75 RP11-58O9.2 MIR6867 RARA-AS1 CTD-2267D19.7 RP5-1028K7.2

UC 17q21.2

chr17:42156716-42774617

rs12942547

STAT3 STAT5A STAT5B

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
17q21.2	chr17:42156716-42774617	rs12942547 A>G	5.71e-11^C	1.09 (1.05-1.12)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs12942547	CRO	021	1.68e-10	1.11	A
rs12942547	CRO		1.01e-16	1.11	A
rs12942547 A>G	IBD	017	5.51e-22^C	1.1 (1.08-1.14)^C	A
rs12942547 A>G	UC	024	5.71e-11^C	1.09 (1.05-1.12)^C	A

Genes

Protein-coding Genes PSMC3IP STAT5A TUBG1 PTRF COASY STAT5B PLEKHH3 HCRT VPS25 STAT3 NAGLU EZH1 CNTNAP1 KCNH4 ATP6V0A1 CCR10 TUBG2 FAM134C HSD17B1 GHDC MLX RAMP2
Non-coding Genes MIR6780A RP11-358B23.7 CTD-3193K9.3 AC003104.1 MIR548AT AC107993.1 CTD-3193K9.1 MIR5010 RP11-358B23.6 HSD17B1P1 CTD-3193K9.11 RP11-400F19.12 CTD-3193K9.4 RP11-400F19.6 RNU7-97P RP11-400F19.18 RP11-400F19.8 ATP5LP7 HMGB3P27 RP11-194N12.2 PTP4A2P1 HMGN2P15 RP11-358B23.5 RAMP2-AS1
Protein Coding Genes +/-0.5Mb of Region ZNF385C HAP1 EIF1 DHX58 HSPB9 NKIRAS2 GAST KLHL11 TTC25 ACLY CTD-2132N18.3 RAB5C FKBP10 DNAJC7 KAT2A NT5C3B CNP JUP P3H4 KLHL10 AC055866.1 AARSD1 G6PC CNTD1 RUNDC1 RPL27 AOC3 PTGES3L VAT1 WNK4 PSME3 AOC2 COA3 PTGES3L-AARSD1 NBR1 TMEM106A IFI35 BRCA1 RND2 BECN1
Non-coding Genes +/-0.5Mb of Region CTD-2132N18.4 RP11-156E6.1 RP11-229E13.4 RP13-415G19.2 RN7SL399P RNA5SP442 RP11-358B23.1 CTD-2132N18.2 RNU6-287P RPL21P4 U2 U2 LINC00671 RNU2-1 NBR2 MIR6781 AOC4P RP11-242D8.1 LINC00854 U2 SNORA40 CTD-3199J23.6 RP11-242D8.2 RP11-242D8.3 U2 U2 U2 U2

UC 17q24.3

chr17:72591636-72652289

rs7210086

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
17q24.3	chr17:72591636-72652289	rs7210086 A>C	1.89e-09^C	1.11 (1.06-1.16)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7210086 A>C	IBD	017	9.58e-08^C	1.06 (1.02-1.1)^C	A
rs7210086 A>C	UC	024	1.89e-09^C	1.11 (1.06-1.16)^C	A

Genes

Protein-coding Genes SLC39A11
Non-coding Genes CTD-3010D24.3 RPL32P33 LINC00511
Protein Coding Genes +/-0.5Mb of Region SOX9
Non-coding Genes +/-0.5Mb of Region SOX9-AS1 AC007461.2 RP11-1124B17.1 RP11-57A1.1 RP11-171G2.1 RN7SKP180 AC080037.1 SCARNA24 RP11-766H1.1

UC 18q22.2

chr18:69831437-69902924

rs727088

CD226

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
18q22.2	chr18:69831437-69902924	rs727088 A>G	1.93e-08^C	1.10 (1.06-1.14)^C	G	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs727088	T1D	025	3.81e-11	1.13	G
rs727088 A>G	UC	024	1.93e-08^C	1.10 (1.06-1.14)^C	G
rs727088 A>G	IBD	017	4.65e-09^C	1.08 (1.05-1.11)^C	G

Genes

Protein-coding Genes DOK6 CD226
Non-coding Genes
Protein Coding Genes +/-0.5Mb of Region RTTN SOCS6
Non-coding Genes +/-0.5Mb of Region RP11-17E3.1 RP11-543H23.2 RP11-465I4.3 RP11-543H23.1 RP11-465I4.2 RP11-41O4.1 RP11-484N16.1 RP11-41O4.2

UC 18p11.21

chr18:12738414-12925254

rs1893217

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
18p11.21	chr18:12738414-12925254	rs1893217 A>G	1.40e-12^C	1.15 (1.10-1.21)^C	G	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1893217	UC	024	2.04e-09	1.15	G
rs1893217	CEL	009	9.77e-09	1.15	G
rs1893217 A>G	T1D	001	1.63e-08^D	1.20^D	G
rs1893217 A>G	IBD	017	3.05e-26^C	1.17 (1.13-1.22)^C	G
rs1893217 A>G	T1D	025	1.20e-15^D	1.21^D	G
rs1893217 A>G	CRO	011	1.29e-14^D	1.25 (1.18-1.32)^D	G
rs1893217 A>G	T1D	004	3.60e-15^D
rs1893217 A>G	CRO	021	3.05e-25^C	1.18 (1.13-1.24)^C	G
rs1893217 A>G	CEL	038	2.52e-10^C	1.17 (1.12-1.23)^C	G

Genes

Protein-coding Genes PTPN2
Non-coding Genes RP11-973H7.5 STK25P1 Y_RNA RP11-973H7.1 EIF4A2P1 RP11-973H7.4
Protein Coding Genes +/-0.5Mb of Region AFG3L2 PSMG2 SPIRE1 CEP76 TUBB6 PRELID3A CIDEA CEP192 LDLRAD4 SEH1L
Non-coding Genes +/-0.5Mb of Region RP11-973H7.3 RP11-64C12.8 RP11-861E21.1 RP11-64C12.9 RP11-861E21.2 RP11-64C12.1 RNU6-170P RNU7-129P RP11-861E21.3 RP11-807E13.3 RP11-794M8.1 RP11-756J15.2 AP001198.1 C18orf15 RP11-691H4.3 RP11-773H22.4 RP11-807E13.2 RP11-756J15.3 LDLRAD4-AS1 RP11-794M8.2

UC 18q21.1

chr18:48827214-48922435

rs7240004

SMAD7

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
18q21.1	chr18:48827214-48922435	rs7240004 A>G	1.31e-09^C	1.09 (1.05-1.12)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7240004	UC		2.50e-10	1.09	A
rs7240004 A>G	IBD	017	9.81e-09^C	1.05 (1.02-1.09)^C	A
rs7240004 A>G	UC	024	1.31e-09^C	1.09 (1.05-1.12)^C	A

Genes

Protein-coding Genes SMAD7 CTIF
Non-coding Genes RP11-484L8.1
Protein Coding Genes +/-0.5Mb of Region ZBTB7C DYM
Non-coding Genes +/-0.5Mb of Region RP11-23B5.2 RP11-426J5.1 RP11-426J5.2 POLR3GP2 RP11-426J5.3 AC048380.1 RP11-46D1.2 RNA5SP456 RP11-15F12.6 RP11-15F12.1 AC016866.1 RP11-30L3.2 RP11-15F12.3 MIR4744 RP11-1058N17.1

UC 19q13.32

chr19:46546671-46648121

rs1126510

CALM3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
19q13.32	chr19:46546671-46648121	rs1126510 T>G	1.18e-08^C	1.08 (1.04-1.11)^C	G	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1126510 A>G	IBD	017	1.59e-06^C	1.04 (1.01-1.07)^C	G
rs1126510 T>G	UC	024	1.18e-08^C	1.08 (1.04-1.11)^C	G

Genes

Protein-coding Genes GNG8 PPP5D1 CALM3 PTGIR DACT3
Non-coding Genes GAPDHP38 CTB-12A17.3 AC011551.3 CTB-12A17.2
Protein Coding Genes +/-0.5Mb of Region IGFL1 PNMAL2 PNMAL1 PPP5C IGFL3 CCDC8 IGFL2 IGFL4 HIF3A AC008622.1 TMEM160 PRKD2 ZC3H4 AP2S1 FKRP STRN4 NPAS1 ARHGAP35 SAE1 SLC1A5
Non-coding Genes +/-0.5Mb of Region CTC-344H19.6 LLNLF-187D8.1 CTB-158D10.3 AC007193.10 RNU6-924P TGIF1P1 AC006262.11 LLNLR-276E7.1 DKFZp434J0226 AC007193.9 AC007193.6 AC006262.5 IGFL1P1 AC006262.10 RPL12P41 IGFL1P2 AC006262.4 AC007193.8 CTB-147N14.4 CTD-2233K9.1 CTB-174O21.2 CTB-147N14.6 DACT3-AS1 CTB-147N14.7 RN7SL364P MIR320E HNRNPMP2 Y_RNA

UC 19q13.42

chr19:54783517-54916142

rs11672983

LILRB4 NLRP2 NLRP7 KIR2DL1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
19q13.42	chr19:54783517-54916142	rs11672983 G>A	6.50e-11^C	1.10 (1.06-1.14)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11672983 G>A	IBD	017	2.48e-09^C	1.09 (1.06-1.12)^C	A
rs11672983 G>A	UC	024	6.50e-11^C	1.10 (1.06-1.14)^C	A

Genes

Protein-coding Genes KIR2DL4 KIR2DL1 FCAR KIR3DL1 KIR3DL2 NCR1
Non-coding Genes CTB-61M7.1 RNU6-222P KIR3DP1 KIR2DS4 CTB-61M7.2
Protein Coding Genes +/-0.5Mb of Region KIR3DX1 CDC42EP5 KIR3DL3 LILRA1 LILRB1 LILRA2 LAIR1 LILRA4 KIR2DL3 LILRB4 LILRA5 TTYH1 LENG8 LENG9 LAIR2 GP6 PPP1R12C RDH13 UBE2S DNAAF3 FAM71E2 CTD-2587H24.4 BRSK1 KMT5C SYT5 TNNI3 NLRP2 CTD-2105E13.6 HSPBP1 NLRP7 TMEM86B TMEM238 TMEM150B TMEM190 RPL28 PTPRH EPS8L1 IL11 TNNT1 COX6B2 PPP6R1
Non-coding Genes +/-0.5Mb of Region AC010518.2 AC008984.6 CTD-2587H19.3 AC008746.12 AC009892.5 AC245036.1 AC245036.2 AC010518.3 AC008984.7 AC008746.10 AC008746.5 AC009892.10 AC245036.3 VN1R105P AC009892.9 LENG8-AS1 VN1R104P AC008746.3 AC008746.9 CTB-83J4.2 AC245036.6 LILRP1 LILRP2 AC008984.5 CTD-2587H19.2 AC009892.2 AC245036.5 KIR2DP1 MIR8061 AC008984.2 AC245036.4 AC011515.2 AC098784.1 CTC-550B14.7 CTD-2587H24.10 CTD-2587H24.14 AC020922.1 CTD-2105E13.16 MIR6804 MIR6805 CTC-550B14.6 CTD-2587H24.5 CTC-550B14.10 Metazoa_SRP MIR6802 MIR6803 CTC-550B14.1 CTD-2587H24.1 snoU13 CTD-2105E13.14 CTD-2105E13.15 MIR7975

UC 19q13.11

chr19:33219244-33272215

rs17694108

CEBPG

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
19q13.11	chr19:33219244-33272215	rs17694108 G>A	8.16e-13^C	1.11 (1.07-1.15)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs17694108	UC		6.17e-12	1.10	A
rs17694108	IBD	017	2.88e-09	1.10	A
rs17694108 G>A	UC	024	8.16e-13^C	1.11 (1.07-1.15)^C	A
rs17694108 G>A	CRO	021	4.09e-09^C	1.09 (1.05-1.13)^C	A

Genes

Protein-coding Genes SLC7A10
Non-coding Genes CTD-2540B15.6
Protein Coding Genes +/-0.5Mb of Region WDR88 TDRD12 GPATCH1 CEP89 RHPN2 SLC7A9 LRP3 FAAP24 CEBPA PEPD CHST8 CEBPG
Non-coding Genes +/-0.5Mb of Region CTD-2538C1.3 CTD-2085J24.3 AC008521.1 CTD-2540B15.10 CTD-2540B15.13 CTD-2085J24.5 RPL31P60 CTC-461H2.2 CTC-461H2.3 RN7SKP22 AKR1B1P7 CTD-2329C7.2 CTD-2540B15.11 CTD-2540B15.7 RPL21P131 CEBPA-AS1 CTD-2540B15.9 RPS3AP50 CTD-2540B15.12

UC 19p13.2

chr19:10292692-10520699

rs11879191

ICAM1 TYK2 PPAN-P2RY11

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
19p13.2	chr19:10292692-10520699	rs11879191 G>A	4.50e-08^C	1.12 (1.08-1.18)^C	G	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11879191 G>A	CRO	021	1.78e-17^C	1.15 (1.1-1.19)^C	G
rs11879191 G>A	IBD	017	2.04e-18^C	1.14 (1.1-1.18)^C	G
rs11879191 G>A	UC	024	4.50e-08^C	1.12 (1.08-1.18)^C	G

Genes

Protein-coding Genes PDE4A FDX1L TYK2 CTD-2369P2.12 S1PR5 ICAM5 RAVER1 CTD-2369P2.10 CDC37 ZGLP1 ICAM3 KEAP1
Non-coding Genes AC114271.2 CTC-429L19.3 MIR1181
Protein Coding Genes +/-0.5Mb of Region PPAN ICAM1 ICAM4 ZNF846 PIN1 EIF3G PPAN-P2RY11 S1PR2 DNMT1 C19orf66 FBXL12 OLFM2 UBL5 P2RY11 COL5A3 ANGPTL6 MRPL4 RDH8 SMARCA4 ATG4D AP1M2 TMED1 DNM2 C19orf52 C19orf38 CDKN2D ILF3 SLC44A2 QTRT1 CARM1 YIPF2 KRI1
Non-coding Genes +/-0.5Mb of Region CTD-2240E14.4 C3P1 MIR4322 CTD-2369P2.8 RPL10P15 AC020931.1 CTD-2369P2.4 SNORD105B CTD-2369P2.5 CTD-2623N2.5 SNORD105 SNORA70 CTD-2553C6.1 CTD-2623N2.11 MIR5589 MIR1238 RN7SL192P MIR6793 MIR199A1 RNU7-140P ILF3-AS1 MIR4748 CTC-539A10.7 MIR638 AC007229.3 CTC-215O4.4

UC 20q13.12

chr20:44430797-44508282

rs6017342

SERINC3 ADA HNF4A

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
20q13.12	chr20:44430797-44508282	rs6017342 C>A	1.43e-43^C	1.23 (1.19-1.27)^C	C	024
20q13.12	chr20:44430797-44508282	rs6017342 C>A	1.09e-20^D	1.2 (1.15-1.27)^D	C	029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6017342	UC	024	1.01e-29	1.23	C
rs6017342	IBD	017	1.83e-13	1.12	C
rs6017342 C>A	UC	029	1.09e-20^D	1.2 (1.15-1.27)^D	C

Genes

Protein-coding Genes LINC01620 HNF4A TTPAL SERINC3
Non-coding Genes LINC01430 RPL37AP1
Protein Coding Genes +/-0.5Mb of Region OSER1 FITM2 TOX2 GDAP1L1 JPH2 R3HDML KCNK15 RIMS4 WISP2 STK4 ADA TOMM34 PABPC1L PKIG YWHAB
Non-coding Genes +/-0.5Mb of Region MIR3646 AL132772.1 Y_RNA RN7SL443P RP5-881L22.5 RP5-881L22.6 HNF4A-AS1 OSER1-AS1 LINC01260 KCNK15-AS1 RP4-781B1.5 PGBD4P2 STK4-AS1 Y_RNA

UC 20q13.32

chr20:59153293-59295301

rs259964

ZNF831 CTSZ

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
20q13.32	chr20:59153293-59295301	rs259964 G>A	6.55e-07^C	1.07 (1.03-1.11)^C	A	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs259964	CRO		2.08e-09	1.07	A
rs259964	CRO	021	1.68e-08	1.10	A
rs259964 G>A	UC	024	6.55e-07^C	1.07 (1.03-1.11)^C	A
rs259964 G>A	IBD	017	1.01e-12^C	1.09 (1.05-1.12)^C	A

Genes

Protein-coding Genes ZNF831
Non-coding Genes
Protein Coding Genes +/-0.5Mb of Region PRELID3B STX16-NPEPL1 STX16 ATP5E NELFCD NPEPL1 GNAS TUBB1 CTSZ PHACTR3 EDN3
Non-coding Genes +/-0.5Mb of Region GNAS-AS1_2 RP3-492J12.2 RP11-261P9.4 GNAS-AS1_5 GNAS-AS1_1 RP1-309F20.3 MRPS16P2 GNAS-AS1 PIEZO1P2 RP4-806M20.4 RP4-806M20.3 RP1-309F20.4 MIR298 RP4-806M20.5 GNAS-AS1_4 MIR296 AL035250.1 RP4-614C15.2 RP11-164D18.2 RP4-719C8.1 RP4-614C15.3 PIEZO1P1

UC 20q11.21

chr20:32611779-33001967

rs4911259

DNMT3B

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
20q11.21	chr20:32611779-33001967	rs4911259 T>G	2.15e-07^C	1.07 (1.03-1.11)^C	G	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4911259 T>G	IBD	017	1.20e-09^C	1.08 (1.04-1.11)^C	G
rs4911259 T>G	UC	024	2.15e-07^C	1.07 (1.03-1.11)^C	G
rs4911259 T>G	CRO	021	5.12e-06^C	1.08 (1.04-1.11)^C	G

Genes

Protein-coding Genes COMMD7 SUN5 DNMT3B MAPRE1 EFCAB8
Non-coding Genes C20orf203 RP5-1085F17.4 RP5-1085F17.3 BAK1P1
Protein Coding Genes +/-0.5Mb of Region KIF3B PLAGL2 TM9SF4 ASXL1 NOL4L POFUT1 SNTA1 BPIFA3 BPIFA1 BPIFB2 BPIFB4 CBFA2T2 BPIFB6 BPIFA2 BPIFB1 BPIFB3 CDK5RAP1
Non-coding Genes +/-0.5Mb of Region RP11-410N8.1 AL121897.1 AL049539.1 RP11-410N8.4 MIR1825 RP5-1184F4.7 RSL24D1P6 RP5-1184F4.5 RP5-836N17.4 RP11-358N2.2 TSPY26P RP11-410N8.3 BPIFB5P SOCS2P1 RP11-49G10.3 RPL12P3 PUDPP3 AL121756.1 BPIFB9P BPIFA4P

UC 20q13.13

chr20:50301749-50423945

rs913678

CEBPB

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
20q13.13	chr20:50301749-50423945	rs913678 T>C	3.59e-07^C	1.06 (1.03-1.11)^C	T	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs913678 T>C	UC	024	3.59e-07^C	1.06 (1.03-1.11)^C	T
rs913678 T>C	IBD	017	4.59e-08^C	1.05 (1.02-1.09)^C	T

Genes

Protein-coding Genes
Non-coding Genes LINC01271 LINC01270
Protein Coding Genes +/-0.5Mb of Region TMEM189-UBE2V1 TMEM189 UBE2V1 RNF114 CEBPB SLC9A8 SNAI1 SPATA2 PTPN1 FAM65C ADNP PARD6B BCAS4
Non-coding Genes +/-0.5Mb of Region RP11-112L6.2 LINC01272 CEBPB-AS1 RP5-1041C10.3 RP11-112L6.3 KRT18P4 Y_RNA LINC01273 RNU6-147P Metazoa_SRP TRERNA1 AL133228.1 RP4-530I15.6 Y_RNA MIR1302-5 RPL36P2 AL133230.1 RN7SL672P RP4-530I15.9 TMSB4XP6 PSMD10P1 MIR645 COX6CP2 RN7SL636P

UC 20q13.33

chr20:63564900-63814828

rs2297441 rs6062504

TNFRSF6B SLC2A4RG STMN3 ZBTB46 ZGPAT LIME1 RTEL1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
20q13.33	chr20:63567747-63814828	rs6062504 G>A	7.49e-11^C	1.08 (1.04-1.12)^C	G	024
20q13.33	chr20:63564900-63795414	rs2297441 A>G	1.70e-10^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2297441	CRO	021	4.68e-08	1.12	A
rs6062504	UC		1.19e-08	1.08	G
rs6062504	IBD	017	2.65e-10	1.10	G
rs6062504	CRO	021	8.07e-11	1.12	G
rs2297441	IBD	017	4.03e-08	1.10	A
rs2297441 A>G	UC	029	1.70e-10^C
rs6062504 G>A	UC	024	7.49e-11^C	1.08 (1.04-1.12)^C	G

Genes

Protein-coding Genes TNFRSF6B ZGPAT RTEL1 ZBTB46 RP4-583P15.15 LIME1 RTEL1-TNFRSF6B ARFRP1 RP4-583P15.14 SLC2A4RG HELZ2 GMEB2 STMN3
Non-coding Genes ZBTB46-AS1 CTD-3184A7.4 RP4-583P15.10 RP4-583P15.16
Protein Coding Genes +/-0.5Mb of Region NKAIN4 KCNQ2 SRMS CHRNA4 YTHDF1 ARFGAP1 PTK6 C20orf195 EEF1A2 COL20A1 PPDPF BIRC7 TCEA2 PCMTD2 ABHD16B NPBWR2 DNAJC5 OPRL1 SAMD10 RGS19 ZNF512B UCKL1 TPD52L2 MYT1 PRPF6 SOX18 LKAAEAR1
Non-coding Genes +/-0.5Mb of Region RP4-697K14.3 HAR1B RP11-305P22.9 RP4-697K14.15 HAR1A RP5-963E22.6 HAR1A RP11-358D14.3 FLJ16779 RP11-261N11.8 MIR3196 RNU6-994P RP5-963E22.5 RP5-963E22.4 RP11-358D14.2 MIR4326 MIR124-3 RNU1-134P AL118506.1 LINC00176 MIR941-3 AL118506.2 RP11-476I15.5 RP4-591C20.9 MIR647 LINC00266-1 MIR941-5 MIR1914 MIR6813 C20orf181 MIR941-1 UCKL1-AS1 RP13-152O15.5 CICP4 MIR941-4

UC 20q11.22

chr20:34322913-35581362

rs6088765

CEP250 UQCC1 PROCR

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
20q11.22	chr20:34322913-35581362	rs6088765 T>G	2.21e-08^C	1.08 (1.04-1.12)^C	G	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6088765 T>G	UC	024	2.21e-08^C	1.08 (1.04-1.12)^C	G
rs6088765 T>G	IBD	017	9.85e-06^C	1.05 (1.02-1.09)^C	G

Genes

Protein-coding Genes PIGU GGT7 ACSS2 NCOA6 C20orf173 GSS MMP24-AS1 GDF5 UQCC1 PROCR GDF5OS EIF6 RP4-614O4.11 EDEM2 DYNLRB1 ERGIC3 FAM83C MYH7B TP53INP2 TRPC4AP ITCH MMP24 CEP250 MAP1LC3A
Non-coding Genes CTD-3216D2.4 AL118520.1 FDX1P1 RNU6-407P RP3-477O4.5 RP3-468O1.6 RP11-346K17.3 MT1P3 RP3-477O4.14 SNORD56 MIR644A RP4-614O4.13 RNA5SP483 Y_RNA MIR499A CDC42P1 ITCH-AS1 HMGB3P1 AL121753.1 ITCH-IT1 RP11-42O4.2 RPL36P4 MIR1289-1 FER1L4 Y_RNA FAM83C-AS1
Protein Coding Genes +/-0.5Mb of Region EIF2S2 AHCY ASIP RALY CHMP4B SCAND1 PHF20 NFS1 CPNE1 ROMO1 RBM12 CNBD2 RP1-309K20.6 RBM39 SPAG4
Non-coding Genes +/-0.5Mb of Region TPM3P2 PIGPP3 MIR4755 RPS2P1 RP4-785G19.2 RP5-1125A11.6 RALY-AS1 RP5-1125A11.7 RP5-1125A11.4 XPOTP1 RP4-785G19.5 CTD-3216D2.5 RN7SKP271 LINC00657 RPL37P1 RP4-550H1.7 RP4-550H1.4 RNU6-937P RPF2P1 RNU4-40P Y_RNA HIGD1AP16 HMGB3P2 RNU6-759P COX7BP2

UC 21q22.3

chr21:44145591-44266077

rs2838519 rs7282490

ICOSLG CH507-9B2.1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
21q22.3	chr21:44152485-44266077	rs7282490 A>G	1.77e-16^C	1.10 (1.06-1.14)^C	G	024
21q22.3	chr21:44145591-44263692	rs2838519 A>G	6.41e-11^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2838519	IBD	017	1.20e-10	1.10	G
rs2838519	CRO	021	1.76e-09	1.11	G
rs7282490	IBD	017	6.11e-11	1.10	G
rs7282490	CRO	021	1.10e-08	1.11	G
rs7282490	UC		2.06e-16	1.11	G
rs2838519 A>G	UC	029	6.41e-11^C
rs2838519 A>G	CRO	011	2.09e-14^D	1.18 (1.13-1.23)^D	G
rs7282490 A>G	UC	024	1.77e-16^C	1.10 (1.06-1.14)^C	G
rs7282490 A>G	AS	026	6.20e-09^C	1.11^C	G

Genes

Protein-coding Genes ICOSLG DNMT3L C21orf33
Non-coding Genes AP001059.5 AP001056.1 AP001057.1 AP001058.3 AP001055.6 AP001059.7 AP001059.6
Protein Coding Genes +/-0.5Mb of Region CSTB RRP1B PWP2 PDXK RRP1 HSF2BP TRAPPC10 AGPAT3 KRTAP12-3 KRTAP12-1 KRTAP12-2 PFKL C21orf2 TSPEAR KRTAP10-12 KRTAP10-10 LRRC3 AIRE KRTAP12-4 KRTAP10-2 KRTAP10-8 KRTAP10-11 KRTAP10-5 KRTAP10-6 KRTAP10-4 KRTAP10-3 TRPM2 KRTAP10-1 KRTAP10-7 KRTAP10-9
Non-coding Genes +/-0.5Mb of Region AATBC RNU6-859P H2AFZP1 AP001052.1 TMEM97P1 MYL6P1 RNU6-1150P KRTAP10-13P TSPEAR-AS1 AP001063.1 MTND5P1 KB-68A7.1 TRPM2-AS MTCYBP21 AP001062.9 AP001065.15 KB-68A7.2 RP1-225L15.1 snoZ6 snoZ6 AP001062.8 AP001062.7 MTND6P21 TSPEAR-AS2 IMMTP1 LRRC3-AS1

UC 21q21.1

chr21:15326120-15470979

rs1297265 rs2823286

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
21q21.1	chr21:15326120-15470979	rs2823286 G>A	5.95e-14^C	1.12 (1.08-1.16)^C	G	024
21q21.1	chr21:15326120-15470979	rs1297265 A>G	6.99e-13^C			029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1297265	CRO	021	3.45e-16	1.15	A
rs1297265	UC		3.59e-13	1.10	A
rs2823286 G>A	UC	024	5.95e-14^C	1.12 (1.08-1.16)^C	G
rs1297265 A>G	UC	029	6.99e-13^C
rs2823286 G>A	IBD	017	9.28e-30^C	1.16 (1.12-1.19)^C	G

Genes

Protein-coding Genes
Non-coding Genes AJ006998.2 AF246928.1
Protein Coding Genes +/-0.5Mb of Region NRIP1 USP25
Non-coding Genes +/-0.5Mb of Region AF127577.10 AF127936.9 AF127577.11 AF127936.7 AF127577.8 RBMX2P1 AF127577.13 AF127577.12 RBPMSLP RAD23BLP RNU6-1326P CYCSP42 AL034449.1 AJ009632.3

UC 21q22.2

chr21:39081110-39111851

rs2836878

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
21q22.2	chr21:39081110-39111851	rs2836878 G>A	4.62e-48^C	1.27 (1.22-1.32)^C	G	024
21q22.2	chr21:39081110-39111851	rs2836878 G>A	1.86e-22^D	1.25 (1.2-1.32)^D	G	029

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2836878	UC	024	4.59e-30	1.27	G
rs2836878	AS	026	4.72e-16	1.04	C
rs2836878	UC		7.35e-53	1.25	G
rs2836878	CRO	021	1.74e-09	1.12	G
rs2836878 G>A	UC	029	1.86e-22^D	1.25 (1.2-1.32)^D	G
rs2836878 G>A	IBD	017	7.27e-43^C	1.18 (1.14-1.22)^C	G

Genes

Protein-coding Genes
Non-coding Genes
Protein Coding Genes +/-0.5Mb of Region ERG ETS2 HMGN1 BRWD1 SH3BGR PSMG1 B3GALT5 LCA5L WRB
Non-coding Genes +/-0.5Mb of Region AF064858.11 AP001042.1 AF064858.6 SNORA62 AF064858.8 AF064858.10 RPSAP64 LINC00114 AF064858.7 AP001043.1 TIMM9P2 BRWD1-AS2 RPL23AP12 PCBP2P1 RNF6P1 RPS26P4 AF121897.4 MIR6508 Y_RNA METTL21AP1 MYL6P2 uc_338 BRWD1-IT1 B3GALT5-AS1 AF129408.17 BRWD1-AS1

UC 22q11.21

chr22:21454896-21649639

rs2266959

MAPK1 RIMBP3 YDJC UBE2L3 CCDC116

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
22q11.21	chr22:21454896-21649639	rs2266959 G>T	4.65e-07^C	1.08 (1.03-1.13)^C	T	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2266959 G>T	UC	024	4.65e-07^C	1.08 (1.03-1.13)^C	T
rs2266959 G>T	IBD	017	1.39e-16^C	1.11 (1.07-1.15)^C	T
rs2266959 C>A	JIA	023	6.20e-09^D	1.24 (1.15-1.33)^D	A
rs2266959 G>T	CRO	021	3.89e-16^C	1.13 (1.08-1.17)^C	T

Genes

Protein-coding Genes RIMBP3C SDF2L1 CCDC116 YDJC UBE2L3
Non-coding Genes Metazoa_SRP TMEM191C Metazoa_SRP KB-1440D3.14 PI4KAP2 Metazoa_SRP SCARNA17 RN7SKP221
Protein Coding Genes +/-0.5Mb of Region SLC7A4 GGT2 POM121L7 LZTR1 HIC2 THAP7 RIMBP3B AIFM3 LRRC74B P2RX6 YPEL1 PPM1F PPIL2 MAPK1 TOP3B
Non-coding Genes +/-0.5Mb of Region P2RX6P TUBA3GP POM121L8P KB-1183D5.16 Metazoa_SRP FAM230B TUBA3FP XXbac-B135H6.18 E2F6P2 KB-1183D5.13 KB-1183D5.18 Metazoa_SRP MIR649 KB-1592A4.14 KB-1183D5.14 RN7SKP63 THAP7-AS1 KB-1592A4.15 E2F6P3 BCRP6 SCARNA17 AC002472.11 BCRP2 PPP1R26P5 XXbac-B135H6.15 IGLVI-70 LL22NC03-23C6.13 IGLVIV-66-1 IGLVI-63 PRAMENP IGLV4-69 LL22NC03-23C6.12 IGLVV-66 IGLV8-61 MIR130B KB-1027C11.4 IGLVI-68 IGLVIV-64 LL22NC03-88E1.17 RNA5SP493 IGLV10-67 LL22NC03-23C6.15 IGLVIV-65 IGLV1-62 LL22NC03-88E1.18 ABHD17AP5 MIR301B LL22NC03-86G7.1 KB-1440D3.13 RN7SL280P

UC 22q12.2

chr22:29651931-30271212

rs2412970

LIF OSM MTMR3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
22q12.2	chr22:29651931-30271212	rs2412970 A>G	4.73e-07^C	1.07 (1.04-1.11)^C	G	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2412970 A>G	IBD	017	2.70e-14^C	1.08 (1.05-1.11)^C	G
rs2412970 A>G	UC	024	4.73e-07^C	1.07 (1.04-1.11)^C	G
rs2412970 A>G	CRO	021	5.94e-12^C	1.08 (1.05-1.12)^C	G

Genes

Protein-coding Genes ZMAT5 CABP7 LIF OSM ASCC2 MTMR3 UQCR10 NF2 HORMAD2
Non-coding Genes Y_RNA HORMAD2-AS1 RP1-102K2.8 MIR6818 RP1-76B20.11 CTA-85E5.7 RP3-438O4.4 AC004819.1 RP1-102K2.6 AC003681.1 RNU6-331P RP1-76B20.12 RP3-394A18.1 CTA-85E5.6 CNN2P1
Protein Coding Genes +/-0.5Mb of Region KREMEN1 EWSR1 RHBDD3 NIPSNAP1 NEFH EMID1 GAS2L1 AP1B1 RFPL1 RASL10A THOC5 SEC14L6 RP4-539M6.19 SEC14L4 PES1 GAL3ST1 SEC14L3 GATSL3 SEC14L2 RP1-130H16.18 TCN2 DUSP18 SF3A1 RNF215 OSBP2 MTFP1 TBC1D10A SLC35E4 CCDC157
Non-coding Genes +/-0.5Mb of Region AC000041.10 RNU6-1219P AC002059.10 AC000035.3 CTA-984G1.5 RFPL4AP6 RFPL1S CTA-256D12.11 SNORD125 AC000041.8 RPEP4 MIR3653 RP4-539M6.18 RP4-539M6.14 SIRPAP1 RP4-539M6.20 RP4-539M6.21 AL022336.1 RP1-102K2.9 AC004832.1 RNU6-564P SDC4P RP4-539M6.22 RP1-56J10.8 CTA-963H5.5

UC 22q13.1

chr22:39253129-39364639

rs2413583

TAB1 ATF4 APOBEC3G

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
22q13.1	chr22:39253129-39364639	rs2413583 C>T	1.16e-13^C	1.15 (1.1-1.2)^C	C	024

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2413583	CRO		7.72e-36	1.23	G
rs2413583	CRO	021	4.44e-22	1.25	G
rs2413583	UC	024	2.95e-09	1.16	G
rs2413583 C>T	IBD	017	4.40e-33^C	1.2 (1.16-1.25)^C	C
rs2413583 C>T	CRO	011	1.10e-26^C	1.23 (1.18-1.28)^C	C

Genes

Protein-coding Genes SYNGR1 RPL3
Non-coding Genes SNORD43 SNORD83A AL022326.1 RP3-333H23.8 SNORD83B
Protein Coding Genes +/-0.5Mb of Region APOBEC3A APOBEC3F APOBEC3D DNAL4 PDGFB NPTXR APOBEC3G CBX7 APOBEC3H APOBEC3B APOBEC3C CBX6 SUN2 MIEF1 RPS19BP1 ENTHD1 MGAT3 CACNA1I TAB1 ATF4
Non-coding Genes +/-0.5Mb of Region APOBEC3B-AS1 RP4-742C19.13 COX5BP7 CTA-150C2.13 RP4-742C19.12 CTA-150C2.20 FUNDC2P4 RP1-172B20.6 MGAT3-AS1 RP3-333H23.9