Inflammatory Bowel Disease Regions

AS ATD CEL CRO JIA MS PBC PSO RA SLE T1D UC

A table of Human loci associated with Inflammatory Bowel Disease. Cytogenetic bands are defined using data from UCSC genome browser, protein coding and non-coding genes were extracted from EnsEMBL v84. Hits were defined by taking the index variant as described in the listed publication. Starting at the variant of interest, the hit is extended out ±0.1cM. These hits are then merged together to form regions of the genome that are of interest to this disease.

The alleles shown are major allele > minor allele, with the odds ratio being defined for the risk allele. Other signals located in the same region as the primary signal have a pale yellow background and are shown in italics

Filter:

IBD 1q24.3

chr1:172711325-172972573

rs9286879

FASLG TNFSF18

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1q24.3	chr1:172711325-172972573	rs9286879 A>G	1.92e-07^C	1.07 (1.03-1.10)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs9286879 A>G	CRO	021	5.53e-22^C	1.13 (1.08-1.17)^C	G
rs9286879 A>G	IBD	017	1.92e-07^C	1.07 (1.03-1.10)^C	G

Genes

Protein-coding Genes
Non-coding Genes RP3-471M13.2 RP1-15D23.2 RP3-332O11.2 SLC25A38P1 AIMP1P2
Protein Coding Genes +/-0.5Mb of Region FASLG SUCO PIGC C1orf105 DNM3 TNFSF4 TNFSF18
Non-coding Genes +/-0.5Mb of Region RNU6-693P RNU6-157P RP11-296O14.1 GOT2P2 RP3-395P12.2 RP11-296O14.3 RP11-296O14.2

IBD 1p36.13

chr1:19821756-19953230

rs6426833

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1p36.13	chr1:19821756-19953230	rs6426833 A>G	2.02e-28^C	1.11 (1.09-1.15)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6426833	IBD	017	1.06e-13	1.11	A
rs6426833	UC		3.77e-76	1.26	A
rs6426833	UC	024	5.09e-39	1.27	A
rs6426833 A>G	UC	029	3.93e-35^D	1.3 (1.25-1.35)^D	A

Genes

Protein-coding Genes PLA2G2E OTUD3
Non-coding Genes
Protein Coding Genes +/-0.5Mb of Region RNF186 TMCO4 PQLC2 HTR6 MINOS1-NBL1 NBL1 CAPZB MINOS1 UBXN10 PLA2G2A PLA2G2D PLA2G2F PLA2G5 VWA5B1 PLA2G2C
Non-coding Genes +/-0.5Mb of Region RP11-91K11.2 RNU4-28P RN7SL277P RP5-1056L3.3 RP5-1056L3.1 RN7SL304P RP3-340N1.2 RP3-340N1.6 LINC01141 RP4-745E8.2 RP4-749H3.2 UBXN10-AS1

IBD 1p36.33

chr1:1190173-1452909

rs12103

TNFRSF18 TNFRSF4

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1p36.33	chr1:1190173-1452909	rs12103 G>A	7.66e-13^C	1.10 (1.06-1.14)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs12103 G>A	IBD	017	7.66e-13^C	1.10 (1.06-1.14)^C	A
rs12103 G>A	UC	024	2.73e-10^C	1.11 (1.06-1.16)^C	A
rs12103 G>A	CRO	021	6.96e-08^C	1.09 (1.04-1.13)^C	A

Genes

Protein-coding Genes MXRA8 CPSF3L TMEM88B UBE2J2 FAM132A ACAP3 CCNL2 B3GALT6 SDF4 ANKRD65 TNFRSF18 DVL1 SCNN1D PUSL1 TTLL10 TNFRSF4 MRPL20 VWA1 CPTP AURKAIP1 TAS1R3 ATAD3C
Non-coding Genes RP5-902P8.10 MIR6726 RP4-758J18.10 RP4-758J18.2 MIR6808 RP5-902P8.12 MIR6727 RP5-890O3.9 RP4-758J18.13 RP4-758J18.7 NDUFB4P8 RN7SL657P
Protein Coding Genes +/-0.5Mb of Region RNF223 PLEKHN1 NOC2L C1orf159 KLHL17 ISG15 PERM1 HES4 SAMD11 AGRN CFAP74 ATAD3A MIB2 TMEM240 AL645728.1 SLC35E2 NADK ATAD3B C1orf233 SSU72 TMEM52 GNB1 CALML6 CDK11A CDK11B SLC35E2B MMP23B
Non-coding Genes +/-0.5Mb of Region RP11-206L10.4 FAM166AP3 RP11-54O7.16 RP11-54O7.18 RP11-465B22.8 TTLL10-AS1 LINC01342 MIR429 RP11-206L10.2 RP11-206L10.9 RP11-54O7.1 RP11-54O7.10 RP11-54O7.11 RP11-54O7.3 FAM87B TUBB8P11 RP11-54O7.2 AL645608.1 MIR200B MIR200A CICP3 RNU6-1199P RP11-206L10.8 RP11-465B22.3 LINC01128 FAM41C LINC00115 RP11-54O7.17 RP11-54O7.14 RP5-857K21.4 RP5-832C2.5 RP11-345P4.7 MMP23A Metazoa_SRP RP1-283E3.4 RP11-345P4.11 RP11-345P4.9 RP1-283E3.8 RP1-140A9.1 RP11-345P4.10 RP11-345P4.6

IBD 1p31.3

chr1:67128876-67302310

rs11209026

IL12RB2 IL23R

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1p31.3	chr1:67128876-67302310	rs11209026 G>A	8.12e-161^C	2.0 (1.89-2.13)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11209026	AS	026	1.94e-27	1.11	G
rs11209026	IBD	017	1.01e-96	2.01	G
rs11209026 G>A	PSO	013	7.13e-07^D	1.49 (1.75-1.27)^D	G
rs11209026 G>A	UC	029	5.12e-28^D	1.75 (1.56-1.92)^D	G
rs11209026 G>A	CRO	021	1.02e-146^C	2.38 (2.17-2.56)^C	G
rs11209026 G>A	AS	012	9.10e-14^C	1.89 (1.56-2.27)^D	G
rs11209026 G>A	UC	024	3.20e-62^C	1.69 (1.56-1.82)^C	G
rs11209026 G>A	CRO	011	1.00e-64^D	2.63 (2.38-3.03)^D	G

Genes

Protein-coding Genes IL23R C1orf141
Non-coding Genes AL109843.1 RNU6-586P RNU4ATAC4P RP11-131O15.2
Protein Coding Genes +/-0.5Mb of Region MIER1 INSL5 WDR78 SLC35D1 TCTEX1D1 SGIP1 GNG12 IL12RB2 SERBP1 GADD45A
Non-coding Genes +/-0.5Mb of Region RP4-598P13.1 RP4-547N15.3 SNORA31 AL354978.1 RP11-342H21.2 RNU6-1031P RP11-393N21.2 RN7SL392P RNU6-387P RP11-393N21.1 HNRNPCP9 RNU7-80P

IBD 1q31.3

chr1:197342098-197969200

rs2488389

C1orf53

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1q31.3	chr1:197342098-197969200	rs2488389 G>A	5.22e-12^C	1.12 (1.08-1.15)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2488389	IBD	017	6.14e-10	1.11	A
rs2488389 G>A	UC	024	6.79e-06^C	1.11 (1.06-1.15)^C	A
rs2488389 G>A	CRO	021	8.45e-13^C	1.12 (1.08-1.17)^C	A

Genes

Protein-coding Genes C1orf53 DENND1B LHX9 CRB1
Non-coding Genes MRPS21P3 RP11-448G4.2 RP11-448G4.4 Y_RNA EEF1A1P32 RP11-75C23.1 FAM204BP
Protein Coding Genes +/-0.5Mb of Region F13B ZBTB41 CFHR2 CFHR4 CFHR5 RP4-608O15.3 ASPM NEK7
Non-coding Genes +/-0.5Mb of Region SEPT14P12 RP4-608O15.4 RP11-332L8.1 PRR13P1 AC093419.1

IBD 1q32.1

chr1:200062588-200168521

rs2816958

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1q32.1	chr1:200062588-200168521	rs2816958 G>A	8.22e-10^C	1.12 (1.08-1.18)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2816958	UC		1.14e-18	1.20	G
rs2816958 G>A	UC	024	1.98e-17^C	1.23 (1.16-1.3)^C	G
rs2816958 G>A	IBD	017	8.22e-10^C	1.12 (1.08-1.18)^C	G

Genes

Protein-coding Genes NR5A2
Non-coding Genes RP11-47A17.2 AC096633.1
Protein Coding Genes +/-0.5Mb of Region KIF14 DDX59 ZNF281
Non-coding Genes +/-0.5Mb of Region RNU6-778P RNU6-609P RP11-567B20.1 RP11-567B20.2 RNU6-716P AL450244.1 RP11-2L13.1 RNU6-570P RP11-532L16.3 LINC00862 AL590126.1 FAM58BP RP11-532L16.1 RP11-469A15.2 RP11-121P12.1

IBD 1p36.32

chr1:2431888-2879054

rs10797432

TNFRSF14 PLCH2 MMEL1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1p36.32	chr1:2431888-2879054	rs10797432 C>T	4.65e-07^C	1.03 (1.01-1.06)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs10797432 C>T	IBD	017	4.65e-07^C	1.03 (1.01-1.06)^C	C
rs10797432 C>T	UC	024	2.62e-12^C	1.08 (1.04-1.11)^C	C

Genes

Protein-coding Genes PLCH2 FAM213B PANK4 TNFRSF14 MMEL1 TTC34 HES5
Non-coding Genes RP3-395M20.12 RP3-395M20.8 RP11-740P5.2 RP3-395M20.3 RP13-436F16.1 RP3-395M20.9 RP11-740P5.3 RP3-395M20.7 RP3-395M20.2
Protein Coding Genes +/-0.5Mb of Region FAAP20 MORN1 CFAP74 PRKCZ PEX10 RER1 GABRD SKI PRDM16 ACTRT2
Non-coding Genes +/-0.5Mb of Region RP5-892K4.1 RP11-547D24.3 RP11-181G12.2 RP11-181G12.4 AL590822.1 RP4-713A8.1 RP4-740C4.7 RP11-547D24.1 RP4-740C4.5 RP11-22L13.1 LINC00982 RP11-193J6.1 RP1-163G9.2

IBD 1q32.1

chr1:206709013-206867232

rs3024505

IL19 PIGR IL10 IL20 RASSF5 MAPKAPK2 IL24 FCMR

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1q32.1	chr1:206709013-206867232	rs3024505 G>A	6.66e-42^C	1.21 (1.16-1.25)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs3024505	IBD	017	1.20e-22	1.21	A
rs3024505	UC		4.71e-43	1.25	A
rs3024505	CRO	021	8.14e-12	1.16	A
rs3024505 G>A	UC	029	5.76e-17^D	1.25 (1.19-1.32)^D	A
rs3024505 G>A	T1D	025	6.40e-08^D	1.16^D	G
rs3024505 C>T	T1D	004	1.90e-09^C	1.19 (1.1-1.3)^C	C
rs3024505 G>A	SLE	015	4.00e-08^C	1.19 (1.11-1.28)^C	A
rs3024505 G>A	SLE	047	4.64e-09^C	1.12 (1.11-1.24)^D	A
rs3024505 C>T	CRO	011	1.60e-14^C	1.12 (1.07-1.17)^C	T
rs3024505 G>A	UC	024	6.94e-41^C	1.28 (1.22-1.34)^C	A

Genes

Protein-coding Genes IL20 IL19 IL10 MAPKAPK2
Non-coding Genes Y_RNA
Protein Coding Genes +/-0.5Mb of Region SRGAP2 IKBKE RASSF5 DYRK3 EIF2D C4BPB C1orf116 CD55 YOD1 FCAMR PIGR IL24 PFKFB2 C4BPA FCMR
Non-coding Genes +/-0.5Mb of Region C1orf147 CH17-76K2.6 RP11-421E17.4 RP11-534L20.5 RP11-343H5.6 RP11-534L20.4 RP11-343H5.4 MIR6769B RP11-564A8.4 RP11-164O23.8 RP11-564A8.8 RP11-164O23.7 RP11-164O23.5 C4BPAP2 RP11-6J21.2 C4BPAP1

IBD 1q23.3

chr1:161419627-161668253

rs1801274

FCGR3A FCRLA FCGR2B FCGR2A FCGR3B HSPA6

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1q23.3	chr1:161419627-161668253	rs1801274 A>G	3.52e-28^C	1.12 (1.09-1.16)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1801274	UC		1.43e-41	1.19	A
rs1801274 C>T	AS	026	1.40e-09^C	1.11^C	T
rs1801274 A>G	SLE	015	4.10e-04^C	1.16 (1.09-1.20)^C	G
rs1801274 A>G	UC	029	2.16e-20^D	1.2 (1.16-1.27)^D	A
rs1801274 A>G	CRO	021	1.53e-07^C	1.08 (1.04-1.11)^C	A
rs1801274 A>G	SLE	047	1.04e-12^C	1.21 (1.11-1.21)^D	G
rs1801274 A>G	IBD	017	3.52e-28^C	1.12 (1.09-1.16)^C	A
rs1801274 A>G	UC	024	2.12e-38^C	1.19 (1.15-1.23)^C	A

Genes

Protein-coding Genes HSPA6 FCGR2B FCGR3B FCGR2A FCGR3A
Non-coding Genes RPS23P9 RP11-25K21.6 RPS23P10 FCGR2C HSPA7 RP11-5K23.5
Protein Coding Genes +/-0.5Mb of Region USP21 DEDD MPZ AL591806.1 UFC1 TSTD1 KLHDC9 NDUFS2 NR1I3 F11R USF1 RP11-544M22.13 SDHC TOMM40L FCER1G B4GALT3 CFAP126 ARHGAP30 NIT1 PVRL4 ADAMTS4 APOA2 PCP4L1 ITLN2 PFDN2 PPOX OLFML2B NOS1AP DUSP12 FCRLB FCRLA ATF6
Non-coding Genes +/-0.5Mb of Region RRM2P2 RP11-544M22.1 RP11-297K8.2 RNU6-481P RP11-122G18.7 ACA64 RP11-312J18.6 RP11-544M22.8 MIR5187 RP11-312J18.7 RP11-544M22.3 RP11-122G18.9 RP11-227F8.2 RP11-25K21.1 Y_RNA RP11-474I16.8 MIR4654 RPL31P11 RN7SL466P RP11-456P18.2

IBD 1q22

chr1:155052885-156118465

rs670523

MSTO1 UBQLN4 RIT1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1q22	chr1:155052885-156118465	rs670523 G>A	3.67e-07^C	1.06 (1.03-1.09)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs670523 G>A	IBD	017	3.67e-07^C	1.06 (1.03-1.09)^C	A
rs670523 G>A	CRO	021	5.79e-11^C	1.09 (1.05-1.12)^C	A

Genes

Protein-coding Genes EFNA1 MUC1 KIAA0907 UBQLN4 TRIM46 DAP3 MTX1 PKLR FAM189B LMNA ADAM15 MEX3A RXFP4 THBS3 ASH1L EFNA3 RP11-540D14.8 EFNA4 SLC50A1 HCN3 CLK2 GON4L RUSC1 AC234582.2 AC234582.1 YY1AP1 RAB25 ARHGEF2 FDPS GBA RP11-201K10.3 RIT1 DPM3 KRTCAP2 SSR2 LAMTOR2 SCAMP3 MSTO1 SYT11
Non-coding Genes RP11-263K19.6 MSTO2P RNU6-1297P Y_RNA RP11-263K19.4 RP11-101O6.2 AL355388.1 ASH1L-IT1 RP11-29H23.5 RNU6-106P RP11-243J18.2 SNORA80E RP11-336K24.12 HMGN2P18 RP11-336K24.5 MTX1P1 AL713999.1 RP11-29H23.7 MIR6738 MIR92B SCARNA4 RUSC1-AS1 ASH1L-AS1 POU5F1P4 MIR555 DAP3P1 RP11-29H23.6 RP11-29H23.4 GBAP1 SCARNA4
Protein Coding Genes +/-0.5Mb of Region KCNN3 PYGO2 CKS1B ZBTB7B DCST1 SHC1 PMVK FLAD1 PBXIP1 DCST2 CHRNB2 LENEP ADAR UBE2Q1 C1orf61 GPATCH4 SMG5 BGLAP TMEM79 AL365181.2 APOA1BP RHBG PAQR6 MEF2D GLMP SEMA4A IQGAP3 PMF1-BGLAP TSACC PMF1 TTC24 VHLL SLC25A44 CCT3
Non-coding Genes +/-0.5Mb of Region UBE2Q1-AS1 RP11-307C12.11 AL606500.1 RP11-307C12.13 Metazoa_SRP RP11-307C12.12 MIR4258 RP11-61L14.6 RP11-98G7.1 MIR9-1 Y_RNA RP11-284F21.8 SNORA26 RP11-139I14.2 RP11-284F21.11 AL365181.1

IBD 1q23.3

chr1:160727284-160979324

rs4656958

SLAMF7 CD244 ITLN1 F11R USF1 ARHGAP30 SLAMF1 CD48

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1q23.3	chr1:160727284-160979324	rs4656958 G>A	6.80e-09^C	1.06 (1.03-1.1)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4656958	UC		2.82e-09	1.09	G
rs4656958 G>A	IBD	017	6.80e-09^C	1.06 (1.03-1.1)^C	G
rs4656958 G>A	UC	024	6.95e-08^C	1.08 (1.03-1.11)^C	G

Genes

Protein-coding Genes CD244 ITLN1 LY9 SLAMF7 ITLN2
Non-coding Genes RP11-404F10.5 RP11-544M22.1 RP11-312J18.5 RP11-312J18.6 RP11-312J18.3 RP11-312J18.7 RP11-404F10.6
Protein Coding Genes +/-0.5Mb of Region NCSTN COPA SLAMF1 SLAMF6 CD48 CD84 NHLH1 RP11-574F21.3 VANGL2 DCAF8 PEX19 USP21 DEDD MPZ AL591806.1 UFC1 TSTD1 KLHDC9 NDUFS2 NR1I3 F11R USF1 RP11-544M22.13 SDHC TOMM40L FCER1G B4GALT3 CFAP126 ARHGAP30 NIT1 PVRL4 ADAMTS4 APOA2 PCP4L1 PFDN2 PPOX
Non-coding Genes +/-0.5Mb of Region RP11-574F21.2 RPSAP18 SETP9 SUMO1P3 Y_RNA RNU4-42P RP11-528G1.2 RP11-404F10.2 RRM2P2 RP11-297K8.2 RNU6-481P RP11-122G18.7 ACA64 RP11-544M22.8 MIR5187 RP11-544M22.3 RP11-122G18.9

IBD 1p36.12

chr1:22326008-22411939

rs12568930

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1p36.12	chr1:22326008-22411939	rs12568930 T>C	7.42e-14^C	1.1 (1.05-1.14)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs12568930	UC		4.40e-13	1.14	A
rs12568930 T>C	IBD	017	7.42e-14^C	1.1 (1.05-1.14)^C	T
rs12568930 T>C	UC	024	1.26e-17^C	1.15 (1.1-1.2)^C	T

Genes

Protein-coding Genes
Non-coding Genes RP11-415K20.2
Protein Coding Genes +/-0.5Mb of Region CELA3B WNT4 CDC42 HSPG2 CELA3A C1QA C1QC EPHA8 ZBTB40 EPHB2 C1QB
Non-coding Genes +/-0.5Mb of Region CDC42-IT1 RP1-224A6.3 RNU6-776P RP1-224A6.8 RP11-415K20.1 RNU6-1022P RP11-26H16.1 RN7SL386P RP1-224A6.9 MIR4418 LINC00339 RN7SL186P AL158086.1 MIR4684 ZBTB40-IT1 AL611946.1 RP11-69E9.1 MIR4253

IBD 1q32.1

chr1:200892467-201069559

rs7554511

KIF21B

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1q32.1	chr1:200892467-201069559	rs7554511 C>A	1.24e-32^C	1.16 (1.12-1.2)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7554511	CRO		2.09e-27	1.16	C
rs7554511	IBD	017	1.04e-20	1.16	C
rs7554511	UC	024	1.05e-15	1.18	C
rs7554511 C>A	UC	029	2.04e-13^D
rs7554511 C>A	CRO	011	1.58e-07^D	1.14 (1.08-1.19)^D	C
rs7554511 C>A	CRO	021	7.81e-19^C	1.15 (1.11-1.19)^C	C

Genes

Protein-coding Genes C1orf106 KIF21B CACNA1S
Non-coding Genes MROH3P RNU6-704P RP11-168O16.1 RP11-168O16.2
Protein Coding Genes +/-0.5Mb of Region CAMSAP2 KIF14 DDX59 ZNF281 GPR25 IGFN1 TNNT2 LAD1 PKP1 TNNI1 ASCL5 PHLDA3 CSRP1 TMEM9
Non-coding Genes +/-0.5Mb of Region RPL34P6 RP11-92G12.3 RP11-469A15.2 RP11-121P12.1 RP11-134G8.2 RP11-567E21.3 RP11-27G14.4 RP11-134G8.10 RP11-134G8.5 RP11-134G8.7 RP11-134G8.6

IBD 1p12

chr1:119807450-120084479

rs3897478

ADAM30

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1p12	chr1:119807450-120084479	rs3897478 T>C	2.78e-07^C	1.11 (1.06-1.16)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs3897478 T>C	IBD	017	2.78e-07^C	1.11 (1.06-1.16)^C	T
rs3897478 T>C	CRO	021	1.97e-11^C	1.16 (1.1-1.22)^C	T

Genes

Protein-coding Genes REG4 NOTCH2 ADAM30
Non-coding Genes NBPF7 PFN1P9 RP11-114O18.1 RP5-1042I8.7 NOTCH2P1
Protein Coding Genes +/-0.5Mb of Region HAO2 HSD3B1 HMGCS2 HSD3B2 ZNF697 PHGDH SEC22B
Non-coding Genes +/-0.5Mb of Region GAPDHP74 GAPDHP27 GAPDHP33 HSD3BP2 GAPDHP58 GAPDHP32 HSD3BP3 HSD3BP5 HAO2-IT1 RP11-418J17.3 RP5-834N19.1 GAPDHP23 HSD3BP4 LINC00622 RNU1-75P HSD3BP1 RNU6-465P CH17-472G23.4 7SK AC241952.1 NBPF8 U1 CH17-472G23.1 CH17-472G23.2 U2 PFN1P2

IBD 1p36.23

chr1:7853370-8140630

rs35675666

TNFRSF9

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1p36.23	chr1:7853370-8140630	rs35675666 G>T	1.12e-15^C	1.11 (1.06-1.15)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs35675666 G>T	UC	029	4.84e-09^C
rs35675666 G>T	UC	024	5.95e-13^C	1.14 (1.08-1.19)^C	G
rs35675666 G>T	IBD	017	1.12e-15^C	1.11 (1.06-1.15)^C	G
rs35675666 G>T	CRO	021	1.13e-07^C	1.1 (1.05-1.15)^C	G

Genes

Protein-coding Genes UTS2 PARK7 TNFRSF9 ERRFI1
Non-coding Genes CTA-215D11.4 Y_RNA RP5-892F13.2 RP11-431K24.1
Protein Coding Genes +/-0.5Mb of Region PER3 CAMTA1 VAMP3 SLC45A1 RERE
Non-coding Genes +/-0.5Mb of Region CAMTA1-IT1 RP3-467L1.6 RP3-467L1.4 RP4-549F15.1 RP11-338N10.2 RP3-453P22.2 RP11-338N10.1 RP11-338N10.3 RP11-431K24.3 RNU1-7P RNU6-991P RP5-1115A15.2 RP11-431K24.4 Y_RNA RP5-1115A15.1 AL096855.1 SNORA77 RP11-431K24.2

IBD 1p31.1

chr1:77522888-78355813

rs17391694

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1p31.1	chr1:77522888-78355813	rs17391694 C>T	4.93e-06^C	1.09 (1.04-1.14)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs17391694	CRO		2.62e-09	1.13	G
rs17391694 C>T	IBD	017	4.93e-06^C	1.09 (1.04-1.14)^C	C
rs17391694 C>T	CRO	021	2.96e-09^C	1.14 (1.08-1.19)^C	C

Genes

Protein-coding Genes USP33 GIPC2 ZZZ3 FAM73A AK5 NEXN PTGFR FUBP1 DNAJB4
Non-coding Genes RNU6-1102P RN7SL370P RP11-386I14.4 RP11-386I14.2 RNFT1P2 MGC27382 RP11-386I14.3 RP11-472F19.1 NSRP1P1 HSPE1P25 RNA5SP22 RP11-181C21.4 RNA5SP21 RNA5SP20 ACTG1P21 NEXN-AS1
Protein Coding Genes +/-0.5Mb of Region PIGK ST6GALNAC5 IFI44 IFI44L
Non-coding Genes +/-0.5Mb of Region RP4-564M11.2 AC095030.1 AC093433.1 MIR7156 RNU7-8P RP11-363H12.1 RP11-375A5.1 RP4-706A16.3 AC104837.1 RP4-641G12.3 RP4-641G12.4 RNA5SP23

IBD 1q21.3

chr1:151565936-152018664

rs4845604

RORC

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
1q21.3	chr1:151565936-152018664	rs4845604 G>A	5.32e-16^C	1.15 (1.1-1.19)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4845604	UC	024	1.58e-11	1.19	G
rs4845604	IBD	017	9.41e-11	1.14	G
rs4845604 G>A	CRO	021	1.88e-06^C	1.11 (1.05-1.16)^C	G

Genes

Protein-coding Genes S100A10 C2CD4D RORC RIIAD1 LINGO4 OAZ3 THEM5 THEM4 TDRKH TUFT1 CELF3 SNX27 MRPL9
Non-coding Genes KRT8P28 AL450992.2 RP11-98D18.1 RP11-98D18.17 RP11-98D18.2 RP11-98D18.15 AL450992.6 RP11-404E16.1 Y_RNA RNU6-662P RP11-98D18.7 RNU6-1062P RP11-98D18.3 RP11-98D18.16 AL591893.1 RP11-98D18.9
Protein Coding Genes +/-0.5Mb of Region PSMD4 TNFAIP8L2 PI4KB GABPB2 TMOD4 LYSMD1 ZNF687 VPS72 RFX5 MLLT11 PSMB4 CDC42SE1 SCNM1 SELENBP1 CGN SEMA6C PIP5K1A POGZ AL135842.1 S100A11 FLG CRCT1 RPTN HRNR LCE5A TCHHL1 CRNN FLG2 TCHH LCE3C
Non-coding Genes +/-0.5Mb of Region RP11-126K1.8 RP11-68I18.2 RP11-126K1.9 SNORA44 RP11-68I18.10 RP11-74C1.2 RP11-126K1.2 RNY4P25 MIR554 RN7SL444P RP11-126K1.6 RP11-74C1.4 AL589986.2 PUDPP2 RP11-107M16.2 SPTLC1P4 HMGN3P1 FLG-AS1

IBD 2q33.1

chr2:198492027-198792296

rs17229285

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2q33.1	chr2:198492027-198792296	rs17229285 T>C	3.76e-06^C	1.06 (1.03-1.09)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs17229285	UC	024	3.59e-10	1.12	G
rs17229285 T>C	IBD	017	3.76e-06^C	1.06 (1.03-1.09)^C	C

Genes

Protein-coding Genes PLCL1
Non-coding Genes AC019330.1 AC068121.1 AC019330.2
Protein Coding Genes +/-0.5Mb of Region SATB2
Non-coding Genes +/-0.5Mb of Region AC109589.1 AC005235.1 RNU7-147P AC018717.1 AC018717.2

IBD 2q35

chr2:218074907-218395928

rs2382817

CTDSP1 CXCR1 CXCR2 ARPC2 SLC11A1 TMBIM1 PNKD

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2q35	chr2:218074907-218395928	rs2382817 C>A	3.70e-12^C	1.07 (1.04-1.10)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2382817	UC		1.54e-08	1.07	A
rs2382817	CRO		3.79e-09	1.07	A
rs2382817 C>A	CRO	021	1.28e-07^C	1.09 (1.05-1.12)^C	A
rs2382817 C>A	UC	024	5.38e-08^C	1.05 (1.02-1.09)^C	A
rs2382817 C>A	IBD	017	3.70e-12^C	1.07 (1.04-1.10)^C	A

Genes

Protein-coding Genes RUFY4 ARPC2 SLC11A1 CXCR1 PNKD CXCR2 TMBIM1 GPBAR1 AAMP CATIP
Non-coding Genes CATIP-AS2 CATIP-AS1 AC021016.7 MIR6513 HMGB1P9 AC097483.1 RP11-378A13.1 MIR6810
Protein Coding Genes +/-0.5Mb of Region DIRC3 TNS1 WNT6 BCS1L RQCD1 PRKAG3 WNT10A USP37 ZNF142 STK36 CYP27A1 TTLL4 VIL1 PLCD4 RNF25 CTDSP1
Non-coding Genes +/-0.5Mb of Region AC010886.2 RPL7L1P9 MIR6809 AC010136.2 CXCR2P1 RP11-548H3.1 RP11-459I19.1 RN7SKP38 RPL23AP31 RP11-378A13.2 RNU6-136P MIR26B

IBD 2q37.1

chr2:230181042-230371171

rs6716753

SP140

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2q37.1	chr2:230181042-230371171	rs6716753 T>C	1.52e-09^C	1.09 (1.05-1.13)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6716753 T>C	CRO	021	1.17e-16^C	1.13 (1.09-1.18)^C	C
rs6716753 T>C	IBD	017	1.52e-09^C	1.09 (1.05-1.13)^C	C

Genes

Protein-coding Genes SP110 SP140L AC009950.1 SP140
Non-coding Genes
Protein Coding Genes +/-0.5Mb of Region DNER TRIP12 FBXO36 SLC16A14 SP100 ITM2C CAB39
Non-coding Genes +/-0.5Mb of Region RNU6-964P FBXO36-IT1 RNU6-1027P AC009950.2 AC009973.1 AC007559.1 RNU6-613P RNY4P19 HMGB1P3 AC010149.4 TPM3P8 RP11-69J7.1 BANF1P3 RN7SL834P RP11-499P1.1 RNU6-268P RNU6-451P AC098823.3

IBD 2p21

chr2:43221519-43708586

rs10495903

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2p21	chr2:43221519-43708586	rs10495903 C>T	3.20e-10^C	1.09 (1.04-1.13)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs10495903 C>T	CRO	011	1.60e-14^C	1.14 (1.09-1.20)^C	T
rs10495903 C>T	CRO	021	8.03e-12^C	1.11 (1.06-1.17)^C	T
rs10495903 C>T	IBD	017	3.20e-10^C	1.09 (1.04-1.13)^C	T

Genes

Protein-coding Genes PLEKHH2 ZFP36L2 THADA C1GALT1C1L
Non-coding Genes LINC01126 RNU6-958P AC011242.5 RN7SL531P AC010883.5 Y_RNA
Protein Coding Genes +/-0.5Mb of Region MTA3 OXER1 HAAO PPM1B DYNC2LI1 ABCG5 ABCG8 LRPPRC
Non-coding Genes +/-0.5Mb of Region FTOP1 AC098824.6 AC016735.3 RNU6-242P AC093609.1 AC016735.1 AC016735.2 RN7SKP66 RN7SL455P AC019129.2 AC019129.1 PDSS1P2 RP11-559M23.1 RNU6-1048P RNU6-566P

IBD 2q37.3

chr2:240619922-240712978

rs3749171

GPR35

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2q37.3	chr2:240619922-240712978	rs3749171 C>T	2.24e-20^C	1.14 (1.09-1.18)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs3749171	UC	024	1.48e-11	1.17	A
rs3749171	AS	026	1.19e-08	1.03	T
rs3749171	IBD	017	2.00e-11	1.14	A
rs3749171	UC		4.22e-18	1.15	A
rs3749171 C>T	CRO	021	3.02e-08^C	1.11 (1.06-1.15)^C	T

Genes

Protein-coding Genes AQP12B GPR35 AQP12A
Non-coding Genes RP11-118M12.2 AC011298.2 RP11-118M12.1
Protein Coding Genes +/-0.5Mb of Region OTOS DUSP28 GPC1 RNPEPL1 ANKMY1 CAPN10 MYEOV2 MTERF4 AGXT CROCC2 PASK SNED1 KIF1A ANO7 C2orf54 PPP1R7
Non-coding Genes +/-0.5Mb of Region AC124861.2 PP14571 AC124861.1 U3 CAPN10-AS1 MIR149 AC005237.4 AC104809.4 AC104809.2 AC005237.2 AC093585.6

IBD 2p14

chr2:65250869-65490608

rs6740462

SPRED2

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2p14	chr2:65250869-65490608	rs6740462 A>C	2.35e-08^C	1.08 (1.04-1.11)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6740462 A>C	IBD	017	2.35e-08^C	1.08 (1.04-1.11)^C	A
rs6740462 A>C	CRO	021	1.06e-08^C	1.11 (1.06-1.15)^C	A

Genes

Protein-coding Genes SPRED2 ACTR2
Non-coding Genes AC012370.3 AC012370.2 AC074391.1
Protein Coding Genes +/-0.5Mb of Region SLC1A4 SERTAD2 RAB1A CEP68
Non-coding Genes +/-0.5Mb of Region AC007365.2 RN7SL341P RN7SL211P SNORA74 AC007318.5 RP11-420C9.1 AC007880.1 AC007880.2 AC007386.2 AC007386.3 RNU6-548P AC007386.4 Y_RNA AC007389.3 KRT18P33 AC007389.1 RP11-418H16.1 AC007389.2 RN7SL635P VTRNA2-2P AC007389.4 RP11-340F16.1 RP11-340F16.2

IBD 2p23.2

chr2:28377859-28449611

rs925255

FOSL2 BRE

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2p23.2	chr2:28377859-28449611	rs925255 C>T	2.49e-14^C	1.09 (1.06-1.12)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs925255	CRO		1.07e-16	1.11	G
rs925255	IBD	017	1.53e-09	1.09	G
rs925255 C>T	CRO	021	2.67e-15^C	1.12 (1.09-1.16)^C	C

Genes

Protein-coding Genes FOSL2
Non-coding Genes RP11-373D23.3 RP11-373D23.2 AC104695.4 FLJ31356
Protein Coding Genes +/-0.5Mb of Region BRE MRPL33 RBKS SPDYA PLB1 WDR43 TRMT61B PPP1CB
Non-coding Genes +/-0.5Mb of Region uc_338 RPL23AP34 RP11-674I16.2 RP11-674I16.1 AC093690.1 MIR4263 AC097724.3 AC074011.2 SNORD53 SNRPGP7 SNORD92 SNORD53_SNORD92 RP11-713D19.1 Y_RNA RNA5SP89

IBD 2p16.1

chr2:60706158-61642429

rs7608910

REL KIAA1841 C2orf74 AHSA2

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2p16.1	chr2:60706158-61642429	rs7608910 A>G	8.65e-32^C	1.14 (1.11-1.17)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7608910	UC		1.25e-23	1.14	G
rs7608910	CRO		2.95e-23	1.13	G
rs7608910	IBD	017	1.49e-18	1.14	G
rs7608910 A>G	UC	024	6.57e-25^C	1.15 (1.11-1.19)^C	G
rs7608910 A>G	CRO	021	6.92e-19^C	1.13 (1.09-1.17)^C	G
rs7608910 A>G	UC	029	1.70e-14^D	1.19 (1.14-1.24)^D	G

Genes

Protein-coding Genes C2orf74 PUS10 PAPOLG KIAA1841 USP34 XPO1 REL AHSA2 PEX13
Non-coding Genes RNU6-612P AC016727.3 LINC01185 AC010733.5 AC016747.1 RP11-355B11.2 RNU6-1145P RP11-373L24.1 RP11-479F13.1 RP11-493E12.2 RP11-416L21.1 RN7SL632P RPL21P33 ATP1B3P1 AC016727.1 RNU4-51P RP11-493E12.3 RP11-493E12.1 AC016747.3 NONOP2 RNA5SP95 RP11-355B11.1 SNORA70B AC016894.1
Protein Coding Genes +/-0.5Mb of Region BCL11A AC107081.1 CCT4 FAM161A COMMD1
Non-coding Genes +/-0.5Mb of Region MIR4432 MIR4432HG RN7SL361P RP11-416L21.2 AC007381.3 RNU1-32P AC007381.1 AC009970.1 AC108039.3 RP11-681L4.1 RP11-681L4.2 AC108039.1 RPS24P7 AC018462.2 AC107081.5 Y_RNA

IBD 2q37.1

chr2:233232538-233674416

rs12994997

INPP5D ATG16L1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2q37.1	chr2:233232538-233674416	rs12994997 A>G	5.04e-35^C	1.14 (1.1-1.16)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs12994997	CRO		1.37e-77	1.25	A
rs12994997 A>G	IBD	017	5.04e-35^C	1.14 (1.1-1.16)^C	A
rs12994997 A>G	CRO	021	4.14e-70^C	1.23 (1.19-1.27)^C	A

Genes

Protein-coding Genes ATG16L1 UGT1A10 UGT1A9 SAG DGKD UGT1A8 USP40
Non-coding Genes RP11-400N9.1 SCARNA5 UGT1A11P UGT1A12P RP11-289A15.1 UGT1A13P Y_RNA SCARNA6
Protein Coding Genes +/-0.5Mb of Region GIGYF2 C2orf82 KCNJ13 NGEF INPP5D NEU2 TRPM8 UGT1A3 HJURP UGT1A5 UGT1A6 SPP2 UGT1A7 UGT1A4 MROH2A UGT1A1
Non-coding Genes +/-0.5Mb of Region Y_RNA RN7SL32P AC106876.2 RNU6-107P AC064852.4 AC114812.9 DNAJB3 AC005538.1 AC006037.2 AC114812.8 AC114812.5 AC005538.3 RPL17P11 AC114812.10 UGT1A2P AC005538.5 RP11-263G22.1 MSL3P1

IBD 2p23.3

chr2:24464482-25234839

rs6545800

ADCY3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2p23.3	chr2:24464482-25234839	rs6545800 C>T	9.40e-15^C	1.11 (1.08-1.14)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6545800 C>T	UC	024	4.05e-06^C	1.07 (1.03-1.11)^C	T
rs6545800 C>T	IBD	017	9.40e-15^C	1.11 (1.08-1.14)^C	T
rs6545800 C>T	CRO	021	6.14e-16^C	1.14 (1.10-1.18)^C	T

Genes

Protein-coding Genes CENPO PTRHD1 NCOA1 DNMT3A DNAJC27 ADCY3 EFR3B POMC
Non-coding Genes RN7SL856P RNU6-936P AC013267.1 Y_RNA LINC01381 DNAJC27-AS1 SUCLA2P3 RNA5SP88 SNORD14 RP11-443B20.1
Protein Coding Genes +/-0.5Mb of Region SF3B6 ITSN2 FAM228B C2orf44 UBXN2A RP11-507M3.1 TP53I3 MFSD2B FAM228A FKBP1B PFN4 DTNB ASXL2
Non-coding Genes +/-0.5Mb of Region RNU6-370P HMGN2P20 AC008073.9 AC066692.1 AC009228.1 RPL36AP13 AC008073.7 SCARNA21 RN7SL610P Y_RNA AC012074.2 MIR1301 AC104699.1 AC010150.2

IBD 2q12.1

chr2:102238781-102651983

rs917997

IL1R2 IL18R1 IL1R1 IL1RL2 IL1RL1 IL18RAP

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2q12.1	chr2:102238781-102651983	rs917997 C>T	6.17e-17^C	1.10 (1.07-1.14)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs917997 G>A	CEL	038	1.11e-15^C	1.19 (1.14-1.25)^C	A
rs917997 C>T	CRO	021	3.12e-20^C	1.14 (1.10-1.18)^C	T
rs917997 C>T	IBD	017	6.17e-17^C	1.10 (1.07-1.14)^C	T

Genes

Protein-coding Genes SLC9A2 SLC9A4 IL1RL1 IL18RAP IL18R1 IL1RL2
Non-coding Genes FAM183DP SDR42E1P5 AC007278.3 MIR4772 AC007278.2
Protein Coding Genes +/-0.5Mb of Region MAP4K4 IL1R2 IL1R1 MFSD9 TMEM182
Non-coding Genes +/-0.5Mb of Region AC007271.3 LINC01127 AC073987.1 AC108051.2 AC007251.2 AC108051.3 AC108051.1

IBD 2q24.2

chr2:162104363-162502867

rs2111485

IFIH1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2q24.2	chr2:162104363-162502867	rs2111485 G>A	2.52e-07^C	1.07 (1.04-1.10)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2111485	T1D	025	3.81e-18	1.18	G
rs2111485	UC		2.11e-10	1.09	A
rs2111485 G>A	VIT	036	4.91e-15^C	1.3^D	G
rs2111485 G>A	UC	024	1.93e-08^C	1.09 (1.05-1.12)^C	A
rs2111485 G>A	SLE	047	1.27e-11^C	1.15 (1.2-1.11)^D	G
rs2111485 G>A	IBD	017	2.52e-07^C	1.07 (1.04-1.10)^C	A

Genes

Protein-coding Genes IFIH1 GCA GCG FAP KCNH7
Non-coding Genes RNA5SP109 AC007750.1 AC007750.5
Protein Coding Genes +/-0.5Mb of Region DPP4 SLC4A10
Non-coding Genes +/-0.5Mb of Region TIMM8AP1 AC008063.2 AC008063.3 AC092841.1 RPEP5 AC092841.2 EIF3EP2 AC007740.1

IBD 2q32.3

chr2:190986040-191143008

rs1517352

STAT1 STAT4

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2q32.3	chr2:190986040-191143008	rs1517352 C>A	3.28e-11^C	1.08 (1.04-1.11)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1517352	CRO		1.31e-10	1.08	C
rs1517352	UC		2.10e-09	1.08	C
rs1517352 C>A	IBD	017	3.28e-11^C	1.08 (1.04-1.11)^C	C
rs1517352 C>A	CRO	021	1.93e-10^C	1.1 (1.05-1.14)^C	C
rs1517352 C>A	UC	024	1.55e-06^C	1.05 (1.02-1.1)^C	C

Genes

Protein-coding Genes STAT4 STAT1
Non-coding Genes AC067945.2 RNU6-959P AC067945.3 AC067945.4
Protein Coding Genes +/-0.5Mb of Region NEMP2 MFSD6 GLS NAB1 MYO1B
Non-coding Genes +/-0.5Mb of Region AC093388.3 AC006460.2 RN7SKP179 AC005540.1 AC005540.3 HMGB1P27 AC092614.2 AC068056.1 RP11-317J9.1 AC092614.1 RNU6-1045P

IBD 2p23.3

chr2:27154127-28142797

rs1728918

UCN

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
2p23.3	chr2:27154127-28142797	rs1728918 G>A	8.44e-09^C	1.07 (1.04-1.10)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1728918 G>A	CRO	021	4.86e-16^C	1.12 (1.09-1.16)^C	A
rs1728918 G>A	IBD	017	8.44e-09^C	1.07 (1.04-1.10)^C	A

Genes

Protein-coding Genes MPV17 FNDC4 BRE ZNF513 KRTCAP3 GTF3C2 AC109829.2 GCKR SNX17 MRPL33 TRIM54 SLC5A6 ZNF512 GPN1 AC109829.1 C2orf16 NRBP1 TCF23 UCN PPM1G SLC4A1AP CAD EIF2B4 DNAJC5G IFT172 RBKS ATRAID SUPT7L SLC30A3 CCDC121
Non-coding Genes uc_338 AC013403.13 LINC01460 AC074117.13 RP11-674I16.2 RNU6-986P SNORA36 AC074117.10 RP11-674I16.1 GTF3C2-AS1 RP11-158I13.2 FTH1P3 MIR4263 AC074091.1
Protein Coding Genes +/-0.5Mb of Region KCNK3 CENPA DPYSL5 EMILIN1 PREB SLC35F6 ABHD1 AGBL5 PRR30 TMEM214 CGREF1 OST4 MAPRE3 KHK PLB1 FOSL2
Non-coding Genes +/-0.5Mb of Region RP11-503P10.1 AC015977.5 AC013472.4 AC015977.6 AGBL5-AS1 CDKN2AIPNLP2 AC013472.3 AGBL5-IT1 RP11-195B17.1 RPL23AP34 AC074011.2 RP11-373D23.3 RP11-373D23.2 SNRPGP7 AC104695.4 AC093690.1 FLJ31356

IBD 3p24.3

chr3:18566300-18808423

rs4256159

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
3p24.3	chr3:18566300-18808423	rs4256159 C>T	1.65e-11^C	1.11 (1.06-1.15)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4256159	CRO	021	6.11e-10	1.15	A
rs4256159 C>T	IBD	017	1.65e-11^C	1.11 (1.06-1.15)^C	T

Genes

Protein-coding Genes
Non-coding Genes SATB1-AS1
Protein Coding Genes +/-0.5Mb of Region SATB1 TBC1D5 KCNH8
Non-coding Genes +/-0.5Mb of Region RAD23BP1 RP11-158G18.1 RNU6-138P

IBD 3p21.31

chr3:48465783-50711580

rs3197999

MST1 GPX1 BSN USP4 IP6K2 MST1R UCN2 PFKFB4 IP6K1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
3p21.31	chr3:48465783-50711580	rs3197999 G>A	1.01e-47^C	1.18 (1.14-1.22)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs3197999	UC	024	1.30e-22	1.21	A
rs3197999	UC		2.24e-37	1.19	A
rs3197999 G>A	PSC	032	2.45e-26^D	1.33 (1.26-1.40)^D	A
rs3197999 G>A	CRO	011	6.17e-17^D	1.22 (1.16-1.27)^D	A
rs3197999 G>A	CRO	021	5.31e-29^C	1.16 (1.12-1.20)^C	A
rs3197999 G>A	IBD	017	1.01e-47^C	1.18 (1.14-1.22)^C	A

Genes

Protein-coding Genes UCN2 IMPDH2 GNAI2 AMIGO3 TUSC2 CCDC36 COL7A1 SLC38A3 CISH IP6K2 NCKIPSD PFKFB4 MON1A MST1 HYAL2 RBM5 CDHR4 IP6K1 SHISA5 HYAL1 ATRIP DAG1 RHOA RNF123 IFRD2 GNAT1 MST1R LSMEM2 CELSR3 NPRL2 DOCK3 USP4 KLHDC8B P4HTM AMT HYAL3 C3orf62 BSN PRKAR2A NICN1 C3orf84 HEMK1 ZMYND10 RBM6 QRICH1 USP19 TREX1 ARIH2 WDR6 XXcos-LUCA11.5 TMEM89 GMPPB RASSF1 C3orf18 FAM212A CYB561D2 CAMKV UBA7 ARIH2OS SLC26A6 QARS UQCRC1 SEMA3F TMEM115 CCDC71 LAMB2 APEH SEMA3B MAPKAPK3 DALRD3 GPX1 NAT6 NDUFAF3 SLC25A20 TCTA CACNA2D2 TRAIP
Non-coding Genes RP11-3B7.7 MIR6823 MIR4793 CYB561D2 MIR4787 MIR425 RHOA-IT1 CTD-2330K9.2 ZMYND10-AS1 COX6CP14 AC134772.1 AC141002.1 Metazoa_SRP AC099668.5 AC139451.2 RP11-804H8.6 PRKAR2A-AS1 MIR6872 MIR5193 MIR711 RP13-131K19.1 RP13-131K19.2 MIR6890 MIR5787 RP11-3B7.1 RP11-804H8.7 MIR566 BSN-AS2 RP13-131K19.7 AC099668.1 AC139451.1 RN7SL217P ACTBP13 SEMA3B-AS1 RP13-131K19.6 RP11-694I15.7 XXcos-LUCA16.1 RN7SL182P RASSF1-AS1 RNA5SP130 RP11-572O6.1 RP13-1056D16.2 BSN-AS1 CTD-2330K9.3 SEMA3F-AS1 U73166.2 RNA5SP131 RP11-804H8.5 CELSR3-AS1 MIR6824 MIR4271 Y_RNA RBM5-AS1 MIR191
Protein Coding Genes +/-0.5Mb of Region MAP4 CDC25A PLXNB1 ZNF589 SPINK8 CAMP ATRIP TMA7 NME6 FBXW12 CCDC51
Non-coding Genes +/-0.5Mb of Region AC124916.1 RP11-1029M24.1 NDUFB1P1 FCF1P2 RP11-24C3.2 RP11-1029M24.4 RN7SL321P RN7SL664P RNU7-128P Y_RNA MIR4443 MIR2115 AC124916.2 SNRPFP4 MRPS18AP1 ZNF652P1 RP11-646D13.1 AC144634.1 ST13P14

IBD 4q24

chr4:101782996-102192580

rs13126505

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
4q24	chr4:101782996-102192580	rs13126505 G>A	1.19e-06^C	1.11 (1.05-1.17)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs13126505	CRO		1.57e-14	1.20	A
rs13126505 G>A	IBD	017	1.19e-06^C	1.11 (1.05-1.17)^C	A
rs13126505 G>A	CRO	021	2.33e-10^C	1.17 (1.10-1.25)^C	A

Genes

Protein-coding Genes BANK1
Non-coding Genes MTND5P5 RP11-498M5.2 AP002022.1
Protein Coding Genes +/-0.5Mb of Region PPP3CA MANBA SLC39A8 NFKB1
Non-coding Genes +/-0.5Mb of Region MIR1255A RNU6-462P FLJ20021 AF213884.3 RN7SL728P AF213884.1 AF224669.3 RP11-499E18.1 AF213884.2

IBD 4q13.3

chr4:73859603-74142734

rs2472649

CXCL8 PF4 CXCL3 CXCL6 CXCL5 CXCL2 PF4V1 CXCL1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
4q13.3	chr4:73859603-74142734	rs2472649 G>A	4.15e-07^C	1.1 (1.04-1.15)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2472649 G>A	IBD	017	4.15e-07^C	1.1 (1.04-1.15)^C	G
rs2472649 G>A	UC	024	2.57e-08^C	1.12 (1.06-1.19)^C	G

Genes

Protein-coding Genes CXCL3 CXCL2 PF4 CXCL5 MTHFD2L CXCL1 PPBP
Non-coding Genes HNRNPA1P55 RN7SL218P RP11-629B11.4 PPBPP2 CXCL1P
Protein Coding Genes +/-0.5Mb of Region AFP CXCL6 AFM ALB CXCL8 RASSF6 PF4V1 EPGN AREG EREG
Non-coding Genes +/-0.5Mb of Region PPBPP1 RP11-622A1.2 AC112518.3 RP11-447E20.1 RP11-622A1.1 AC142293.3 AC097470.1 RP11-629B11.5 RP11-727M10.1

IBD 4q27

chr4:122017479-122644147

rs7657746

IL21 IL2

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
4q27	chr4:122017479-122644147	rs7657746 A>G	2.76e-13^C	1.11 (1.08-1.15)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7657746	CRO		2.39e-09	1.09	A
rs7657746	UC		5.27e-10	1.10	A
rs7657746	IBD	017	9.52e-11	1.12	A
rs7657746	UC	024	8.33e-09	1.13	A
rs7657746 A>G	CRO	021	1.01e-09^C	1.11 (1.06-1.15)^C	A

Genes

Protein-coding Genes KIAA1109 IL2 IL21 ADAD1
Non-coding Genes AC097533.1 RN7SL335P IL21-AS1
Protein Coding Genes +/-0.5Mb of Region TMEM155 CCNA2 EXOSC9 BBS7 ANXA5 TRPC3 FGF2 NUDT6 SPATA5 BBS12
Non-coding Genes +/-0.5Mb of Region RP11-63B13.1 PP12613 AC021205.1 CETN4P RP11-170N16.2 RP11-170N16.3 AC021205.2 RP11-170N16.1 AC109357.1

IBD 5q31.3

chr5:142033064-142260854

rs6863411

SPRY4 NDFIP1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5q31.3	chr5:142033064-142260854	rs6863411 T>A	1.25e-12^C	1.09 (1.05-1.12)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6863411	CRO	021	2.67e-08	1.10	T
rs6863411	CRO		1.87e-14	1.10	T
rs6863411 T>A	IBD	017	1.25e-12^C	1.09 (1.05-1.12)^C	T
rs6863411 T>A	UC	024	9.87e-06^C	1.08 (1.03-1.11)^C	T

Genes

Protein-coding Genes NDFIP1
Non-coding Genes CTC-463A16.1 AC005740.4
Protein Coding Genes +/-0.5Mb of Region GNPDA1 DIAPH1 ARAP3 RELL2 PCDH12 FCHSD1 HDAC3 PCDH1 RNF14 KIAA0141 SPRY4 FGF1
Non-coding Genes +/-0.5Mb of Region AC005753.1 AC005740.3 AC005740.6 AC008781.7 CTD-2024I7.1 AC005740.5 CTD-2024I7.13 AC005592.3 AC005215.1 SPRY4-IT1_2 SPRY4-IT1 AC005592.1 AC005592.2 SPRY4-IT1_1 RPS12P10

IBD 5q35.2

chr5:173797287-174112331

rs17695092

CPEB4

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5q35.2	chr5:173797287-174112331	rs17695092 T>G	5.14e-06^C	1.08 (1.04-1.11)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs17695092 T>G	IBD	017	5.14e-06^C	1.08 (1.04-1.11)^C	T
rs17695092 T>G	CRO	021	4.68e-09^C	1.1 (1.05-1.14)^C	T

Genes

Protein-coding Genes HMP19 C5orf47 CPEB4
Non-coding Genes RPL12P22 LINC01485 RP11-619L12.4 RP11-619L12.3
Protein Coding Genes +/-0.5Mb of Region BOD1 STC2
Non-coding Genes +/-0.5Mb of Region CTB-43E15.2 LINC01484 CTB-164N12.1 CTB-33O18.1 MIR8056 CTB-33O18.2 CTB-43E15.1 AC008674.1 RNU6-500P CTB-32H22.1 CTB-33O18.3 GAPDHP71 SUMO2P6 LINC01411 CTC-229L21.1 CTC-430J12.2

IBD 5q33.1

chr5:150658703-151012930

rs11741861

TNIP1 IRGM

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5q33.1	chr5:150658703-151012930	rs11741861 A>G	2.31e-26^C	1.25 (1.19-1.31)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11741861	CRO		5.88e-44	1.33	G
rs11741861	CRO	021	2.76e-22	1.32	G
rs11741861 A>G	IBD	017	2.31e-26^C	1.25 (1.19-1.31)^C	G
rs11741861 A>G	UC	024	1.05e-07^C	1.15 (1.08-1.22)^C	G

Genes

Protein-coding Genes SYNPO DCTN4 IRGM MYOZ3 ZNF300 RBM22 SMIM3
Non-coding Genes CTC-311G1.1 CTC-311G1.2 ZNF300P1 CTC-345K18.2
Protein Coding Genes +/-0.5Mb of Region CD74 ARSI CDX1 NDST1 TCOF1 RPS14 SLC6A7 CAMK2A SLC36A3 FAT2 GM2A SLC36A2 CCDC69 SLC36A1 GPX3 AC008641.1 ANXA6 TNIP1
Non-coding Genes +/-0.5Mb of Region CTB-140J7.2 CTC-367J11.1 AC011372.1 CTC-224D3.1 AC034205.1 CTB-23I7.3 CTB-17P3.4 CTC-251D13.1 CTB-23I7.1 CTB-23I7.2 RNA5SP197

IBD 5p15.2

chr5:10667329-10833902

rs2930047

DAP

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5p15.2	chr5:10667329-10833902	rs2930047 T>C	1.03e-08^C	1.07 (1.03-1.10)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2930047	CRO		1.21e-12	1.09	G
rs2930047 T>C	IBD	017	1.03e-08^C	1.07 (1.03-1.10)^C	C
rs2930047 T>C	CRO	021	1.45e-07^C	1.08 (1.04-1.12)^C	C

Genes

Protein-coding Genes DAP
Non-coding Genes CTD-2154B17.3 CTD-2154B17.1 CTD-2154B17.4 CTD-2154B17.2
Protein Coding Genes +/-0.5Mb of Region CCT5 ANKRD33B FAM173B CMBL MARCH6 ROPN1L CTNND2
Non-coding Genes +/-0.5Mb of Region CTD-2199O4.3 Y_RNA CTD-2256P15.2 LINC01513 CTD-2256P15.5 CTD-2256P15.3 RP11-54F2.1 CTD-2199O4.5 CTD-2199O4.6 CTD-2256P15.4 AC012640.1 RPL30P7 RP11-54F2.8 RP11-1C1.5 MIR6131 CTD-2199O4.4 RP11-1C1.6 RP11-54F2.9 ANKRD33B-AS1 RP11-215G15.4 RP11-1C1.4 CTD-2199O4.7 CTD-2256P15.1 Y_RNA ROPN1L-AS1 RNU6-429P

IBD 5q35.3

chr5:177079730-177421018

rs12654812

DOK3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5q35.3	chr5:177079730-177421018	rs12654812 G>A	1.68e-08^C	1.07 (1.04-1.10)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs12654812 G>A	UC	024	6.67e-08^C	1.08 (1.04-1.11)^C	A
rs12654812 G>A	IBD	017	1.68e-08^C	1.07 (1.04-1.10)^C	A

Genes

Protein-coding Genes F12 RAB24 SLC34A1 FGFR4 MXD3 NSD1 PRELID1 LMAN2 PFN3 ZNF346 GRK6 RGS14
Non-coding Genes CTD-2301A4.3 PRMT1P1 CTD-2301A4.1
Protein Coding Genes +/-0.5Mb of Region UIMC1 EIF4E1B TSPAN17 GPRIN1 SNCB CDHR2 HK3 UNC5A DBN1 TMED9 FAM153A PRR7 FAM193B PDLIM7 B4GALT7 DDX41 DOK3
Non-coding Genes +/-0.5Mb of Region LINC01574 MIR4281 RP11-375B1.1 RP11-375B1.2 ZNF346-IT1 RP11-1334A24.6 RP11-1101H11.1 OR1X5P RP11-423H2.5 PRR7-AS1 RP11-1334A24.5 RP11-1026M7.2 RP11-423H2.1 RP11-1277A3.3 RP11-1277A3.2 AC106795.1 RP11-1277A3.1 RP11-1026M7.3

IBD 5q31.1

chr5:132075186-132658977

rs2188962

IRF1 IL4 CSF2 IL5 PDLIM4 SLC22A5 IL13 IL3 ACSL6 SLC22A4

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5q31.1	chr5:132075186-132658977	rs2188962 C>T	3.74e-37^C	1.16 (1.13-1.19)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2188962	CRO	021	2.30e-33	1.22	A
rs2188962 C>T	IBD	017	3.74e-37^C	1.16 (1.13-1.19)^C	T
rs2188962 C>T	UC	024	3.81e-09^C	1.08 (1.04-1.12)^C	T

Genes

Protein-coding Genes SLC22A4 CSF2 IRF1 IL13 C5orf56 P4HA2 PDLIM4 RAD50 SLC22A5 IL5
Non-coding Genes snoZ6 AC063976.2 AC063976.3 RP11-89G4.1 TH2LCRR MIR3936 AC063976.7 AC116366.6 AC063976.1 P4HA2-AS1 AC034220.3 Y_RNA AC116366.5
Protein Coding Genes +/-0.5Mb of Region FNIP1 CTB-127M13.1 RAPGEF6 MEIKIN CTC-432M15.3 ACSL6 IL3 CCNI2 SHROOM1 SOWAHA UQCRQ ZCCHC10 KIF3A LEAP2 IL4 SEPT8 HSPA4 GDF9 AFF4
Non-coding Genes +/-0.5Mb of Region AC005593.2 AC034228.2 AC034228.4 AC034228.3 AC004775.5 AC010240.2 Y_RNA RP11-485M7.2 AC004237.1 ATP6V0E1P1 CTC-350I8.1 RP11-485M7.3 RNA5SP192 Y_RNA AC010240.3 RP11-485M7.1

IBD 5q11.2

chr5:56121772-56154384

rs10065637

IL6ST IL31RA

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5q11.2	chr5:56121772-56154384	rs10065637 C>T	6.25e-08^C	1.09 (1.05-1.12)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs10065637	RA	019	2.86e-16	1.22	G
rs10065637	CRO		1.19e-09	1.10	G
rs10065637 C>T	IBD	017	6.25e-08^C	1.09 (1.05-1.12)^C	C
rs10065637 C>T	CRO	021	3.68e-12^C	1.12 (1.08-1.16)^C	C

Genes

Protein-coding Genes ANKRD55
Non-coding Genes RNA5SP184 RPL17P22 RNU6-299P
Protein Coding Genes +/-0.5Mb of Region DDX4 SLC38A9 IL6ST AC008914.1 IL31RA C5orf67
Non-coding Genes +/-0.5Mb of Region RP11-175M2.1 snoU13 CTD-2031P19.4 RNA5SP183 CTD-2031P19.5 HNRNPH1P3 FLJ31104 CTD-2227I18.1 RNU6ATAC2P RPL26P19 CTC-236F12.4 C1GALT1P2 AC022431.3 HMGN1P17 AC008391.1 RNA5SP185 PSMC1P4 RP11-155L15.1

IBD 5q13.2

chr5:73161293-73284584

rs7702331

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5q13.2	chr5:73161293-73284584	rs7702331 A>G	4.77e-06^C	1.05 (1.02-1.09)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7702331 A>G	IBD	017	4.77e-06^C	1.05 (1.02-1.09)^C	A
rs7702331 A>G	CRO	011	5.90e-12^C	1.12 (1.08-1.18)^C	A
rs7702331 A>G	CRO	021	5.63e-10^C	1.09 (1.05-1.12)^C	A

Genes

Protein-coding Genes TMEM174
Non-coding Genes RP11-60A8.1
Protein Coding Genes +/-0.5Mb of Region FCHO2 TMEM171 TNPO1 FOXD1 ARHGEF28 BTF3 UTP15 ANKRA2
Non-coding Genes +/-0.5Mb of Region AC063979.1 CTD-2339M3.1 CTD-2376I4.2 RPL7P22 CTC-347C20.1 Y_RNA CTD-2376I4.1 MIR4804 CTC-250P20.2 CTC-250P20.1 Y_RNA AC116345.1 CTD-2631K10.1 RP11-232L2.1 RP11-232L2.2 RP11-60A8.2 RP11-79P5.3 FOXD1-AS1 LINC01385 RP11-79P5.9 RP11-79P5.10 CTC-575I10.1 LINC01386

IBD 5q31.1

chr5:135044841-135190861

rs254560

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5q31.1	chr5:135044841-135190861	rs254560 G>A	1.54e-08^C	1.04 (1.01-1.07)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs254560 G>A	IBD	017	1.54e-08^C	1.04 (1.01-1.07)^C	A
rs254560 G>A	UC	024	2.55e-09^C	1.06 (1.02-1.09)^C	A
rs254560 G>A	UC	029	1.25e-09^C

Genes

Protein-coding Genes
Non-coding Genes CTC-276P9.2 C5orf66 CTC-276P9.3
Protein Coding Genes +/-0.5Mb of Region CAMLG SAR1B SEC24A PITX1 C5orf24 TXNDC15 CATSPER3 DDX46 JADE2 PCBD2 H2AFY NEUROG1 DCANP1 TIFAB CXCL14
Non-coding Genes +/-0.5Mb of Region AC006077.3 MTND5P11 MTND4LP30 C5orf66-AS1 AC006077.4 CTC-276P9.4 RNU6-757P RNU6-1311P RNU6-1164P CTB-2L9.1 MTCYBP18 MTND6P4 MTND4P12 MTND3P25 MIR4461 CTB-138E5.1 CTC-203F4.2 C5orf66-AS2 CTC-321K16.1 CTC-321K16.4

IBD 5q33.3

chr5:159397971-159460964

rs6871626

IL12B

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5q33.3	chr5:159397971-159460964	rs6871626 C>A	1.43e-42^C	1.18 (1.15-1.22)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6871626	IBD	017	8.82e-28	1.18	A
rs6871626	CRO	021	2.09e-26	1.20	A
rs6871626	UC	024	1.69e-14	1.15	A
rs6871626 C>A	AS	026	3.10e-08^C	1.10^C	A
rs6871626 C>A	UC	029	1.11e-21^C

Genes

Protein-coding Genes
Non-coding Genes AC008697.1 AC008703.1
Protein Coding Genes +/-0.5Mb of Region IL12B EBF1 RNF145 UBLCP1 ADRA1B
Non-coding Genes +/-0.5Mb of Region SNORA68 RNU4ATAC2P CTD-2363C16.1 RP11-175K6.2 AC011376.1 CTD-2363C16.2 CTB-11I22.1 RP11-175K6.1 CTB-11I22.2 AC008703.2 GAPDHP40 AC008691.1 AC011343.1

IBD 5q15

chr5:96743698-97141497

rs1363907

ERAP2 LNPEP ERAP1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5q15	chr5:96743698-97141497	rs1363907 G>A	8.71e-12^C	1.07 (1.04-1.10)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1363907 G>A	IBD	017	8.71e-12^C	1.07 (1.04-1.10)^C	A
rs1363907 G>A	CRO	021	5.62e-13^C	1.07 (1.04-1.11)^C	A

Genes

Protein-coding Genes LNPEP ERAP1 LIX1 CAST ERAP2
Non-coding Genes CTD-2260A17.1 AC008906.1 SETP22 Y_RNA AC008865.1 AC008850.3 CTD-2215E18.1 CTD-2260A17.2 CTD-2260A17.3
Protein Coding Genes +/-0.5Mb of Region PCSK1 RIOK2
Non-coding Genes +/-0.5Mb of Region CTC-506B8.1 RP11-254I22.2 AC020900.1 CTD-2337A12.1 CTD-2215E18.2 RP11-155G15.3 RNU1-73P YTHDF1P1 LINC01340 CTD-2215E18.3 CTD-2278B20.1

IBD 5q23.3

chr5:130189256-131985036

rs4836519

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5q23.3	chr5:130189256-131985036	rs4836519 T>C	6.18e-07^C	1.08 (1.04-1.11)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4836519 T>C	IBD	017	6.18e-07^C	1.08 (1.04-1.11)^C	T
rs4836519 T>C	CRO	021	4.24e-10^C	1.09 (1.05-1.14)^C	T

Genes

Protein-coding Genes FNIP1 LYRM7 CTB-127M13.1 RAPGEF6 MEIKIN CDC42SE2 CTC-432M15.3 ACSL6 HINT1
Non-coding Genes RP1-247F3.1 ARL2BPP4 AC005741.2 AC005593.2 RP11-114H7.2 AC034228.4 RNU7-53P AC004769.1 uc_338 RP11-114H7.1 RP11-114H7.3
Protein Coding Genes +/-0.5Mb of Region CHSY3 KIAA1024L ADAMTS19 SLC22A4 CSF2 IRF1 C5orf56 P4HA2 PDLIM4 IL3 SLC22A5
Non-coding Genes +/-0.5Mb of Region HSPA8P4 CTC-575N7.1 RNU6ATAC10P RNA5SP191 snoZ6 AC063976.2 AC063976.3 AC034228.2 MIR3936 AC063976.7 AC116366.6 AC034228.3 AC063976.1 P4HA2-AS1 AC034220.3 Y_RNA AC116366.5

IBD 5p13.1

chr5:40286865-40626651

rs11742570

PTGER4

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
5p13.1	chr5:40286865-40626651	rs11742570 C>T	3.46e-59^C	1.19 (1.16-1.23)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11742570	CRO		3.66e-87	1.28	G
rs11742570	MS	030	2.08e-08	1.10	G
rs11742570	CRO	021	1.72e-50	1.29	G
rs11742570	IBD	017	6.55e-34	1.20	G
rs11742570 C>T	UC	024	1.36e-10^C	1.08 (1.04-1.12)^C	C
rs11742570 C>T	CRO	011	7.08e-36^D	1.33 (1.27-1.39)^D	C

Genes

Protein-coding Genes
Non-coding Genes AC108105.1
Protein Coding Genes +/-0.5Mb of Region RPL37 C7 PTGER4 MROH2B CARD6 PRKAA1 AC008810.1 TTC33
Non-coding Genes +/-0.5Mb of Region GCSHP1 LINC00604 RNU1-150P KRT18P56 LINC00603 RNU7-161P SNORD72 SNORA57 RP11-301A5.2 SNORA63

IBD 6p23

chr6:14691381-14736360

rs17119

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
6p23	chr6:14691381-14736360	rs17119 A>G	3.08e-11^C	1.08 (1.03-1.11)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs17119 A>G	IBD	017	3.08e-11^C	1.08 (1.03-1.11)^C	A
rs17119 A>G	UC	024	9.37e-07^C	1.05 (1.01-1.11)^C	A
rs17119 A>G	CRO	021	8.51e-09^C	1.08 (1.04-1.12)^C	A
rs17119 A>G	MS	030	1.00e-10^C	1.11^D	A

Genes

Protein-coding Genes
Non-coding Genes RP11-146I2.1
Protein Coding Genes +/-0.5Mb of Region
Non-coding Genes +/-0.5Mb of Region RP11-330A16.1 RP3-448I9.2 LINC01108 RNU6-793P RP3-448I9.1 RP11-359N11.1 RP1-190J20.2 RN7SL332P AL050335.1

IBD 6p22.3

chr6:21338901-21476386

rs12663356

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
6p22.3	chr6:21338901-21476386	rs12663356 C>T	2.54e-06^C	1.05 (1.02-1.09)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs12663356 C>T	IBD	017	2.54e-06^C	1.05 (1.02-1.09)^C	C
rs12663356 C>T	CRO	021	4.01e-12^C	1.1 (1.06-1.14)^C	C

Genes

Protein-coding Genes
Non-coding Genes RP1-135L22.1
Protein Coding Genes +/-0.5Mb of Region CDKAL1 SOX4
Non-coding Genes +/-0.5Mb of Region RNU6-150P BOLA2P3 RP11-204E9.1 RP4-551N11.1 LINC00581 CASC15

IBD 6q22.33

chr6:127629641-128019645

rs13204742

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
6q22.33	chr6:127629641-128019645	rs13204742 G>T	1.19e-08^C	1.13 (1.09-1.18)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs13204742	CRO		3.24e-15	1.15	A
rs13204742 G>T	IBD	017	1.19e-08^C	1.13 (1.09-1.18)^C	T
rs13204742 G>T	CRO	021	8.38e-15^C	1.17 (1.12-1.23)^C	T

Genes

Protein-coding Genes PTPRK THEMIS
Non-coding Genes RP11-325O24.1 MRPS17P5 RP11-325O24.6 RP11-325O24.5 RP11-325O24.2 RP11-151M7.1
Protein Coding Genes +/-0.5Mb of Region KIAA0408 RNF146 RSPO3 ECHDC1 RP3-403A15.5 SOGA3 C6orf58
Non-coding Genes +/-0.5Mb of Region RP1-177A13.1 YWHAZP4 RPL5P18 RNA5SP217 RP3-403A15.1 RP1-86D1.5 RP11-103C16.2

IBD 6q21

chr6:111075054-111647042

rs3851228

TRAF3IP2 REV3L FYN

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
6q21	chr6:111075054-111647042	rs3851228 A>T	1.08e-13^C	1.15 (1.09-1.22)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs3851228	UC		1.13e-14	1.20	A
rs3851228	CRO		2.76e-08	1.14	A
rs3851228 A>T	IBD	017	1.08e-13^C	1.15 (1.09-1.22)^C	T
rs3851228 A>T	CRO	021	4.02e-07^C	1.14 (1.07-1.21)^C	T
rs3851228 A>T	UC	024	1.77e-11^C	1.18 (1.10-1.26)^C	T

Genes

Protein-coding Genes SLC16A10 KIAA1919 TRAF3IP2 REV3L
Non-coding Genes BRD7P4 RP5-1112D6.8 C6orf3 REV3L-IT1 TRAF3IP2-AS1 RP11-428F8.2 RP5-1112D6.4 FCF1P5 RP3-415N12.1 RNU6-960P RP5-1112D6.7
Protein Coding Genes +/-0.5Mb of Region GTF3C6 CDK19 RPF2 AMD1 TUBE1 FAM229B WISP3 LAMA4 FYN
Non-coding Genes +/-0.5Mb of Region RP11-346C16.6 RNU6-906P RNU6-1115P RP11-346C16.1 RP11-569A2.2 CNN2P9 RP3-418A9.3 RP11-397G5.2 RP11-346C16.2 AL357515.1 SNORA40 GSTM2P1 RNU6-957P AL158035.1 RP1-97J1.2

IBD MHC

chr6:31253891-31375183

rs9264942

MICB HLA-C NFKBIL1 PSORS1C1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
MHC	chr6:31253891-31375183	rs9264942 T>C	7.26e-14^C	1.08 (1.05-1.12)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs9264942	PSO	016	1.40e-77	1.86	C
rs9264942	MS	030	3.73e-34	1.24	A
rs9264942	CEL	009	1.21e-147	1.71	T
rs9264942	ATD	018	1.38e-14		NULL
rs9264942	CRO	021	2.48e-15	1.15	G
rs9264942	CRO		6.78e-32	1.16	G
rs9264942 T>C	IBD	017	7.26e-14^C	1.08 (1.05-1.12)^C	C

Genes

Protein-coding Genes HLA-B HLA-C
Non-coding Genes DHFRP2 WASF5P RPL3P2 USP8P1 XXbac-BPG248L24.13 XXbac-BPG248L24.10 AL671883.1 RNU6-283P XXbac-BPG248L24.12 MIR6891
Protein Coding Genes +/-0.5Mb of Region DDR1 DPCR1 PSORS1C2 HCG27 POU5F1 PSORS1C1 GTF2H4 SFTA2 TCF19 VARS2 C6orf15 MUC22 CCHCR1 CDSN MUC21 MICA LY6G6E NEU1 TNF DDX39B ATP6V1G2-DDX39B LY6G6D NCR3 C6orf25 PRRC2A MCCD1 VWA7 CLIC1 XXbac-BPG32J3.22 CSNK2B SLC44A4 LTB VARS MSH5-SAPCD1 LY6G5C LY6G6C ABHD16A HSPA1L LY6G6F LY6G5B MICB XXbac-BPG32J3.20 C6orf48 MSH5 BAG6 APOM AIF1 LTA C6orf47 ATP6V1G2 DDAH2 LST1 LSM2 NFKBIL1 GPANK1 HSPA1B HSPA1A XXbac-BPG32J3.19 SAPCD1
Non-coding Genes +/-0.5Mb of Region XXbac-BPG299F13.14 PSORS1C3 HCG22 Y_RNA DDR1-AS1 HCG21 XXbac-BPG27H4.8 RNU6-1133P HCG20 RN7SKP186 XXbac-BPG299F13.17 XXbac-BPG299F13.15 LINC00243 POLR2LP MIR4640 XXbac-BPG118E17.10 XXbac-BPG299F13.16 RPL15P4 HLA-S AL662801.1 Y_RNA LINC01149 XXbac-BPG181B23.6 RNU6-850P Y_RNA SNORD84 SAPCD1-AS1 MIR6832 XXbac-BPG16N22.5 MIR4646 SNORA38 UQCRHP1 C6orf47-AS1 SNORD117 ZDHHC20P2 HCP5 SNORD48 Y_RNA Y_RNA FGFR3P1 SNORD52 XXbac-BPG181B23.7 PPIAP9 DDX39B-AS1

IBD MHC

chr6:32426760-32715138

rs6927022

HLA-DRA HLA-DQA1 HLA-DQA2 HLA-DQB1 HLA-DRB1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
MHC	chr6:32426760-32715138	rs6927022 A>G	3.19e-52^C	1.14 (1.1-1.18)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6927022 A>G	UC	024	4.71e-133^C	1.45 (1.39-1.49)^C	A
rs6927022 A>G	IBD	017	3.19e-52^C	1.14 (1.1-1.18)^C	A

Genes

Protein-coding Genes HLA-DRA HLA-DRB1 HLA-DQB1 HLA-DRB5 HLA-DQA1
Non-coding Genes MTCO3P1 HLA-DQB1-AS1 HLA-DRB6 RNU1-61P HLA-DRB9
Protein Coding Genes +/-0.5Mb of Region NELFE C4B C4A AL645922.1 STK19 AGER CFB DXO CYP21A2 TNXB SKIV2L RNF5 AGPAT1 EGFL8 PPT2-EGFL8 PRRT1 C2 GPSM3 PBX2 NOTCH4 PPT2 ATF6B FKBPL C6orf10 XXbac-BPG116M5.17 BTNL2 HSD17B8 SLC39A7 HLA-DOB RXRB TAP1 TAP2 BRD2 HLA-DMA HLA-DOA HLA-DPA1 RING1 COL11A2 HLA-DQB2 HLA-DQA2 PSMB9 XXbac-BPG181M17.5 XXbac-BPG246D15.9 HLA-DPB1 HLA-DMB PSMB8
Non-coding Genes +/-0.5Mb of Region C4B-AS1 RNU6-603P XXbac-BPG154L12.5 XXbac-BPG154L12.4 CYP21A1P RNA5SP206 MIR1236 XXbac-BPG300A18.13 HCG23 HNRNPA1P2 MIR6833 C4A-AS1 TNXA STK19B MIR6721 C2-AS1 PPP1R2P1 HLA-DPA2 XXbac-BPG181M17.6 RNY4P10 HLA-DPA3 PSMB8-AS1 HLA-DPB2 MIR219A1 HLA-DQB3 MIR3135B AL645941.1 COL11A2P1 HCG24 XXbac-BPG254F23.7 RPL32P1 BRD2-IT1 HLA-Z

IBD 6q15

chr6:90097116-90319078

rs1847472

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
6q15	chr6:90097116-90319078	rs1847472 C>A	1.10e-09^C	1.06 (1.03-1.09)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1847472	CRO		1.09e-10	1.09	C
rs1847472	T1D	025	1.42e-09	1.12	A
rs1847472 C>A	IBD	017	1.10e-09^C	1.06 (1.03-1.09)^C	C
rs1847472 G>T	CRO	011	5.10e-09^C	1.08 (1.03-1.11)^C	G
rs1847472 C>A	CRO	021	1.57e-10^C	1.09 (1.05-1.12)^C	C

Genes

Protein-coding Genes BACH2
Non-coding Genes RP3-453I5.2 MIR4464
Protein Coding Genes +/-0.5Mb of Region MDN1 LYRM2 CASP8AP2 GJA10 ANKRD6 MAP3K7
Non-coding Genes +/-0.5Mb of Region RP11-63K6.7 RN7SKP110 RP1-122O8.7 DNAJC19P6 Y_RNA RP11-63K6.4 RP11-63K6.1 RP11-63K6.5 Y_RNA RP3-512E2.2 RP1-45N11.1 AL391559.1

IBD 6p22.3

chr6:20639373-21029922

rs9358372

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
6p22.3	chr6:20639373-21029922	rs9358372 A>G	1.55e-12^C	1.09 (1.06-1.12)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs9358372	CRO	021	2.52e-09	1.11	G
rs9358372	CRO		1.05e-10	1.08	G
rs9358372 A>G	IBD	017	1.55e-12^C	1.09 (1.06-1.12)^C	G

Genes

Protein-coding Genes CDKAL1
Non-coding Genes RP3-348I23.3 RP3-348I23.2 RNU6-150P
Protein Coding Genes +/-0.5Mb of Region E2F3 MBOAT1
Non-coding Genes +/-0.5Mb of Region AL136303.1 AL136303.2 Y_RNA RP11-239H6.2 RN7SL128P E2F3-IT1 RNU6-141P RP11-204E9.1 RP1-135L22.1 LINC00581

IBD 6q27

chr6:166931410-167134466

rs1819333

RNASET2 RP11-517H2.6 CCR6 RPS6KA2

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
6q27	chr6:166931410-167134466	rs1819333 T>G	3.63e-15^C	1.08 (1.05-1.11)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1819333 T>G	CRO	021	6.76e-21^C	1.11 (1.08-1.15)^C	T
rs1819333 T>G	IBD	017	3.63e-15^C	1.08 (1.05-1.11)^C	T

Genes

Protein-coding Genes FGFR1OP RNASET2 CCR6 RP11-514O12.4
Non-coding Genes RP1-167A14.2 MIR3939 RP11-517H2.6
Protein Coding Genes +/-0.5Mb of Region RPS6KA2 TTLL2 GPR31 UNC93A TCP10 TCP10L2
Non-coding Genes +/-0.5Mb of Region FAM103A2P MIR1913 RP3-497J21.1 RPS6KA2-AS1 RPS6KA2-IT1 RP11-568A7.3 RP3-366N23.4 RP11-568A7.1 RP11-568A7.2 RP11-568A7.4

IBD 6q21

chr6:105954686-106099497

rs6568421

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
6q21	chr6:105954686-106099497	rs6568421 A>G	2.52e-17^C	1.11 (1.07-1.14)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6568421 A>G	CRO	011	4.37e-08^D	1.13 (1.07-1.18)^D	G
rs6568421 A>G	IBD	017	2.52e-17^C	1.11 (1.07-1.14)^C	G
rs6568421 A>G	UC	024	6.22e-06^C	1.07 (1.03-1.11)^C	G
rs6568421 A>G	CRO	021	8.24e-20^C	1.14 (1.10-1.18)^C	G

Genes

Protein-coding Genes PRDM1
Non-coding Genes
Protein Coding Genes +/-0.5Mb of Region AIM1 ATG5 RTN4IP1
Non-coding Genes +/-0.5Mb of Region RP3-359N14.2 RP3-359N14.1 RN7SKP211 Y_RNA RP3-335E1.1 Y_RNA RNA5SP211 RNU6-344P RP11-404H14.1 RN7SL47P RP1-134E15.3 U4

IBD 6q22.33

chr6:126764254-127221808

rs9491697

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
6q22.33	chr6:126764254-127221808	rs9491697 A>G	1.14e-06^C	1.06 (1.03-1.09)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs9491697 A>G	IBD	017	1.14e-06^C	1.06 (1.03-1.09)^C	G
rs9491697 A>G	CRO	021	3.79e-10^C	1.08 (1.04-1.11)^C	G

Genes

Protein-coding Genes RSPO3
Non-coding Genes
Protein Coding Genes +/-0.5Mb of Region CENPW KIAA0408 RNF146 THEMIS ECHDC1 RP3-403A15.5 SOGA3 C6orf58
Non-coding Genes +/-0.5Mb of Region PRELID1P1 MIR588 RNU6-200P RPS4XP9 RP11-753G20.2 VIM2P RP1-177A13.1 RP11-325O24.1 YWHAZP4 RP11-325O24.6 RP11-325O24.5 RP11-325O24.2 RPL5P18 RNA5SP217 RP3-403A15.1 RP11-151M7.1

IBD 6q23.3

chr6:137568592-137806067

rs6920220

TNFAIP3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
6q23.3	chr6:137568592-137806067	rs6920220 G>A	1.01e-14^C	1.10 (1.06-1.14)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6920220	UC	024	5.19e-12	1.16	A
rs6920220	IBD	017	4.78e-08	1.10	A
rs6920220 G>A	RA	019	2.30e-13^C	1.20^C	A
rs6920220 G>A	T1D	040	7.26e-06^D	1.12^D	A
rs6920220 G>A	RA	005	1.58e-05^D	1.20 (1.06-1.36)^D	A
rs6920220 G>A	UC	029	8.05e-17^C
rs6920220 G>A	SLE	015	4.00e-07^C	1.17 (1.10-1.25)^C	A
rs6920220 G>A	T1D	025	7.26e-06^D	1.12^D	A

Genes

Protein-coding Genes
Non-coding Genes RP11-95M15.1 RP11-356I2.1 AL357060.1 RP11-95M15.2 Y_RNA
Protein Coding Genes +/-0.5Mb of Region OLIG3 IFNGR1 IL22RA2 PBOV1 PERP ARFGEF3 TNFAIP3
Non-coding Genes +/-0.5Mb of Region BTF3L4P3 RPSAP42 RP11-356I2.4 RP11-240M16.1 RP11-10J5.1

IBD 6q24.2

chr6:143504346-143711180

rs12199775

PHACTR2

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
6q24.2	chr6:143504346-143711180	rs12199775 A>G	1.99e-08^C	1.12 (1.06-1.19)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs12199775 A>G	CRO	021	5.43e-07^C	1.15 (1.08-1.23)^C	A
rs12199775 A>G	IBD	017	1.99e-08^C	1.12 (1.06-1.19)^C	A

Genes

Protein-coding Genes FUCA2 PHACTR2
Non-coding Genes VDAC1P8 PHACTR2-AS1 RP1-20N2.8
Protein Coding Genes +/-0.5Mb of Region ADAT2 AIG1 PEX3 SF3B5 PLAGL1 RP3-468K18.7 LTV1 STX11 RP3-468K18.5 ZC2HC1B
Non-coding Genes +/-0.5Mb of Region RP1-95L4.4 RP1-20N2.7 RP1-45I4.3 RP1-45I4.2 RP1-95L4.2 TUBB8P2 AL031320.1 LINC01277 RP1-95L4.3 RNA5SP221 RP3-468K18.6 MRPL42P3 HYMAI RP3-340H11.2 TPT1P4 HYMAI

IBD 7q22.1

chr7:100502511-100911543

rs1734907

EPO

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
7q22.1	chr7:100502511-100911543	rs1734907 G>A	1.92e-10^C	1.11 (1.07-1.16)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1734907	CRO	021	4.10e-11	1.16	A
rs1734907 G>A	IBD	017	1.92e-10^C	1.11 (1.07-1.16)^C	A

Genes

Protein-coding Genes FBXO24 TFR2 SLC12A9 MOSPD3 LRCH4 PCOLCE ZAN POP7 GNB2 SRRT AGFG2 EPHB4 EPO SAP25 ACTL6B ACHE TRIP6 GIGYF1 UFSP1
Non-coding Genes RP11-44M6.1 RP11-126L15.4 RP11-44M6.7 RN7SL416P RP11-44M6.3 MIR6875 PCOLCE-AS1 RN7SL750P RN7SL549P
Protein Coding Genes +/-0.5Mb of Region C7orf61 NYAP1 ZKSCAN1 LAMTOR4 SPDYE3 MBLAC1 MCM7 TAF6 PVRIG COPS6 AP4M1 PILRA GPC2 MEPCE ZCWPW1 CNPY4 STAG3 ZSCAN21 TSC22D4 C7orf43 GATS ZNF3 PILRB PPP1R35 GAL3ST4 ZNHIT1 PLOD3 TRIM56 MUC17 MUC12 SERPINE1 CLDN15 VGF AP1S1 FIS1 COL26A1 MOGAT3 NAT16 IFT22 MUC3A
Non-coding Genes +/-0.5Mb of Region RPL7P60 AC005071.1 Y_RNA AC005071.4 AC005071.2 MIR25 AC005071.3 PVRIG2P STAG3L5P-PVRIG2P-PILRB MIR4658 MIR93 STAG3L5P MIR6840 AC073842.19 PMS2P1 RP11-506M12.1 RP11-758P17.2 RP11-758P17.3 MIR106B RPSAP46 RP11-132A1.6 AZGP1P2 RP5-1106H14.1 RP11-395B7.4 RN7SKP54 RP13-650G11.1 RP11-395B7.2 DGAT2L7P RP11-132A1.3 RP11-132A1.4 MIR4653 RNU6-1104P

IBD 7q31.2

chr7:117234417-117597881

rs38904

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
7q31.2	chr7:117234417-117597881	rs38904 T>C	2.58e-07^C	1.05 (1.02-1.09)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs38904 T>C	UC	024	1.31e-08^C	1.08 (1.04-1.11)^C	T
rs38904 T>C	IBD	017	2.58e-07^C	1.05 (1.02-1.09)^C	T

Genes

Protein-coding Genes CFTR ASZ1 WNT2
Non-coding Genes AC002465.2 AC003045.1 MTCYBP6 AC000111.3 AC006326.3 AC000111.5 MTND4P6 AC000111.4
Protein Coding Genes +/-0.5Mb of Region CAPZA2 MET ST7 CTTNBP2
Non-coding Genes +/-0.5Mb of Region TPM3P1 ST7-OT3_1 ST7-AS2 ST7-AS2_1 AC002542.2 ST7-OT4_4 ST7-OT4_2 ST7-OT4_3 AC106873.4 ST7-OT4 ST7-AS1 MIR6132 ST7-AS1_1 ST7-OT3_2 AC002543.2 Y_RNA RNA5SP239 ST7-OT4_1 ST7-OT3_3 ST7-AS1_2 AC000111.6 AC007568.1 AC003084.2

IBD 7q32.1

chr7:128911686-129137466

rs4728142

TNPO3 IRF5 TSPAN33

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
7q32.1	chr7:128911686-129137466	rs4728142 G>A	1.48e-06^C	1.06 (1.03-1.09)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4728142 G>A	SJO	033	9.75e-17^C	1.29 (1.09-1.52)^D	A
rs4728142 G>A	UC	024	4.37e-14^C	1.10 (1.07-1.14)^C	A
rs4728142 G>A	SLE	037	7.10e-10^D	1.45 (1.37-1.55)^D	A
rs4728142 G>A	UC	029	1.74e-08^C
rs4728142 G>A	IBD	017	1.48e-06^C	1.06 (1.03-1.09)^C	A

Genes

Protein-coding Genes IRF5 TNPO3
Non-coding Genes RP11-309L24.6 RP11-286H14.4 TPI1P2 RP11-128A6.3 RP11-309L24.10 ODCP CYCSP20 RN7SL306P RP11-286H14.2 RP11-286H14.1
Protein Coding Genes +/-0.5Mb of Region HILPDA FLNC CCDC136 FAM71F2 OPN1SW ATP6V1F KCP AC010655.1 CALU FAM71F1 METTL2B AHCYL2 NRF1 SMKR1 SMO STRIP2 TSPAN33
Non-coding Genes +/-0.5Mb of Region RP11-212P7.3 RP11-155G14.6 RP11-274B21.14 RNU6-177P RP11-274B21.4 AC025594.1 RNA5SP243 RP11-155G14.1 RP11-274B21.1 RP11-274B21.13 RP11-274B21.3 RP11-274B21.5 RNA5SP242 RN7SL81P RP11-274B21.2 RP11-274B21.12 RNU7-54P RP11-155G14.5 RP11-212P7.2 RP11-309L24.4 Metazoa_SRP RP11-212P7.1 CICP14 RP11-274B21.10 RP11-274B21.9 IMP3P2 RP11-309L24.2 RP11-448A19.1 RP11-305M3.2 RNY1P11 RP11-286H14.8 RNU1-72P SNRPGP3

IBD 7p22.3

chr7:2695130-2891602

rs798502

CARD11 TTYH3 GNA12

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
7p22.3	chr7:2695130-2891602	rs798502 A>C	1.23e-09^C	1.06 (1.03-1.1)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs798502 A>C	UC	029	2.61e-15^C
rs798502 A>C	IBD	017	1.23e-09^C	1.06 (1.03-1.1)^C	A
rs798502 T>C	UC	024	6.09e-17^C	1.12 (1.09-1.18)^C	T

Genes

Protein-coding Genes GNA12 AMZ1
Non-coding Genes AC006028.11
Protein Coding Genes +/-0.5Mb of Region GRIFIN BRAT1 FTSJ2 EIF3B TTYH3 CHST12 IQCE LFNG NUDT1 SNX8 MAD1L1 SDK1 CARD11
Non-coding Genes +/-0.5Mb of Region MIR4648 RP4-607J2.1 IMMP1LP3 AC004840.8 MIR6836 AC073316.2 RP11-30B1.1 RN7SKP130 AC024028.1 AC004906.3 AC091801.1 AC073316.1

IBD 7q22.1

chr7:99119190-99271073

rs9297145

SMURF1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
7q22.1	chr7:99119190-99271073	rs9297145 A>C	8.21e-12^C	1.08 (1.05-1.12)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs9297145 A>C	UC	024	2.65e-08^C	1.08 (1.03-1.12)^C	C
rs9297145 A>C	CRO	021	1.64e-08^C	1.09 (1.05-1.13)^C	C
rs9297145 A>C	IBD	017	8.21e-12^C	1.08 (1.05-1.12)^C	C

Genes

Protein-coding Genes KPNA7 SMURF1
Non-coding Genes MYH16
Protein Coding Genes +/-0.5Mb of Region TMEM130 NPTX2 TRRAP ZNF789 FAM200A ARPC1B CYP3A7 CYP3A5 PDAP1 ATP5J2-PTCD1 ZKSCAN5 ARPC1A CYP3A7-CYP3A51P GS1-259H13.13 PTCD1 ZNF394 ATP5J2 ZNF655 ZSCAN25 BUD31 CPSF4 CYP3A4
Non-coding Genes +/-0.5Mb of Region AC004893.11 AC004893.10 MIR3609 RNU6-393P AC005020.1 AC069294.1 RP11-757A13.1 AC073063.10 GS1-259H13.2 CYP3A51P GS1-259H13.7

IBD 7q31.1

chr7:107820310-107964373

rs4380874

DLD

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
7q31.1	chr7:107820310-107964373	rs4380874 C>T	7.13e-17^C	1.07 (1.04-1.10)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4380874	UC		6.43e-25	1.14	A
rs4380874	UC	024	7.45e-13	1.14	A
rs4380874 C>T	IBD	017	7.13e-17^C	1.07 (1.04-1.10)^C	T

Genes

Protein-coding Genes LAMB1 DLD
Non-coding Genes CTB-13F3.1
Protein Coding Genes +/-0.5Mb of Region SLC26A4 COG5 GPR22 CBLL1 BCAP29 DUS4L SLC26A3 LAMB4 NRCAM
Non-coding Genes +/-0.5Mb of Region snoU109 BANF1P5 PIGCP2 WBP1LP2 CTB-20D2.1 RP4-593H12.1 AC002467.7 SLC26A4-AS1 RNU7-20P U3 AC005048.1 AC007567.1

IBD 7p12.2

chr7:50206640-50325467

rs1456896

ZPBP IKZF1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
7p12.2	chr7:50206640-50325467	rs1456896 T>C	9.76e-14^C	1.09 (1.05-1.12)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1456896 T>C	IBD	017	9.76e-14^C	1.09 (1.05-1.12)^C	T
rs1456896 T>C	CRO	021	7.28e-15^C	1.11 (1.06-1.15)^C	T
rs1456896 T>C	CRO	011	1.20e-08^D	1.14 (1.09-1.2)^D	T

Genes

Protein-coding Genes IKZF1
Non-coding Genes AC020743.4
Protein Coding Genes +/-0.5Mb of Region VWC2 C7orf72 ZPBP GRB10 DDC FIGNL1
Non-coding Genes +/-0.5Mb of Region GNL2P1 AC020743.2 RP11-138B9.1 AC020743.3 RNU6-1091P DDC-AS1

IBD 8q21.3

chr8:89628493-89942373

rs7015630

RIPK2

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
8q21.3	chr8:89628493-89942373	rs7015630 T>C	6.53e-06^C	1.05 (1.02-1.09)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7015630	CRO		9.00e-10	1.09	A
rs7015630 T>C	CRO	021	1.42e-08^C	1.08 (1.03-1.11)^C	T
rs7015630 T>C	IBD	017	6.53e-06^C	1.05 (1.02-1.09)^C	T

Genes

Protein-coding Genes RIPK2 NBN OSGIN2
Non-coding Genes RP11-37B2.1 RNU6-925P COX6B1P6 SCb-64M4.1
Protein Coding Genes +/-0.5Mb of Region DECR1 CALB1
Non-coding Genes +/-0.5Mb of Region KRT8P4 RPSAP74 LINC00534

IBD 8q24.21

chr8:128484980-128585383

rs6651252

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
8q24.21	chr8:128484980-128585383	rs6651252 T>C	1.29e-08^C	1.12 (1.08-1.16)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6651252	CRO		3.86e-16	1.16	A
rs6651252 T>C	CRO	011	3.90e-18^C	1.23 (1.18-1.3)^C	T
rs6651252 T>C	CRO	021	1.45e-16^C	1.19 (1.12-1.25)^C	T
rs6651252 T>C	IBD	017	1.29e-08^C	1.12 (1.08-1.16)^C	T

Genes

Protein-coding Genes
Non-coding Genes LINC00824
Protein Coding Genes +/-0.5Mb of Region AC026248.1
Non-coding Genes +/-0.5Mb of Region RNU1-106P MIR1208 RP11-55J15.2 MIR1207 RN7SKP226 PVT1 RNU4-25P LINC00976 AC068570.1

IBD 8q24.21

chr8:129468135-129685804

rs1991866

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
8q24.21	chr8:129468135-129685804	rs1991866 C>G	1.65e-09^C	1.05 (1.02-1.08)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1991866 C>G	UC	024	6.74e-06^C	1.04 (1.00-1.08)^C	G
rs1991866 C>G	IBD	017	1.65e-09^C	1.05 (1.02-1.08)^C	G
rs1991866 C>G	CRO	021	8.95e-07^C	1.07 (1.03-1.10)^C	G

Genes

Protein-coding Genes
Non-coding Genes CCDC26 MIR3686 RP11-419K12.1
Protein Coding Genes +/-0.5Mb of Region GSDMC FAM49B ASAP1
Non-coding Genes +/-0.5Mb of Region LINC00977 RP11-26E5.1 RN7SKP206 RP11-1057N3.2 RP11-473O4.1 SNORA25 RP11-473O4.4 RP11-473O4.3 RNU7-181P SNORA12 MTRF1LP2 ASAP1-IT2 MIR5194 RP11-473O4.5 RNU6-1255P

IBD 8q24.13

chr8:125438839-125562774

rs921720

TRIB1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
8q24.13	chr8:125438839-125562774	rs921720 G>A	6.71e-15^C	1.08 (1.05-1.11)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs921720	CRO		1.12e-21	1.13	G
rs921720 G>A	CRO	021	8.30e-20^C	1.11 (1.08-1.15)^C	G
rs921720 G>A	IBD	017	6.71e-15^C	1.08 (1.05-1.11)^C	G

Genes

Protein-coding Genes
Non-coding Genes RP11-136O12.2 AC091114.1
Protein Coding Genes +/-0.5Mb of Region TRIB1 ZNF572 SQLE KIAA0196 NSMCE2
Non-coding Genes +/-0.5Mb of Region RN7SL329P RP11-6D1.3 LINC00964 RP11-1082L8.2 RP11-550A5.2 KIAA0196-AS1 RNU6-442P RP11-697B24.1 SOD1P3 LINC00861 RP11-622O11.4

IBD 9q22.31

chr9:91134438-91402091

rs4743820

NFIL3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
9q22.31	chr9:91134438-91402091	rs4743820 T>C	6.45e-09^C	1.05 (1.02-1.09)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4743820 T>C	UC	024	3.60e-09^C	1.09 (1.04-1.12)^C	T
rs4743820 T>C	IBD	017	6.45e-09^C	1.05 (1.02-1.09)^C	T

Genes

Protein-coding Genes AUH
Non-coding Genes RP11-305L7.6 RP11-305L7.3 RP11-305L7.7 LINC00484 RP11-305L7.5
Protein Coding Genes +/-0.5Mb of Region SYK DIRAS2 NFIL3 ROR2
Non-coding Genes +/-0.5Mb of Region RP11-367F23.1 OR7E109P OR7E108P RP11-367F23.2 RP11-305L7.1 MIR3910-1 RP11-440G5.2 PAICSP2

IBD 9p24.1

chr9:4944089-5274545

rs10758669

JAK2

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
9p24.1	chr9:4944089-5274545	rs10758669 A>C	7.88e-45^C	1.17 (1.14-1.21)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs10758669	CRO		4.18e-34	1.16	C
rs10758669	UC	024	2.99e-17	1.17	C
rs10758669	UC		1.04e-28	1.15	C
rs10758669 A>C	UC	029	2.22e-25^C
rs10758669 A>C	IBD	017	7.88e-45^C	1.17 (1.14-1.21)^C	C
rs10758669 A>C	CRO	011	1.00e-13^D	1.18 (1.13-1.23)^D	C
rs10758669 A>C	CRO	021	1.44e-31^C	1.18 (1.14-1.22)^C	C

Genes

Protein-coding Genes INSL4 JAK2 INSL6
Non-coding Genes MTATP6P11 MTND4P14 TCF3P1 MTND1P11 MTCO3P11 MTND6P5 MTCO2P11 PDSS1P1 RP11-140C18.2 HNRNPA1P41 CSNK1G2P1 IGHEP2 AL158147.1 MTCO1P11 MTND5P14
Protein Coding Genes +/-0.5Mb of Region SLC1A1 SPATA6L RCL1 AK3 CDC37L1 PLPP6 RLN2 CD274 RIC1 RLN1 ERMP1 PDCD1LG2 PLGRKT
Non-coding Genes +/-0.5Mb of Region RP11-6J24.3 CDC37L1-AS1 RP11-307I14.2 AL136231.1 KLF4P1 RP11-125K10.5 ECM1P1 MIR101-2 RP11-12D24.10 RNF152P1 RP11-207C16.4 HMGN2P31 RP11-12D24.6 RP11-574F11.3

IBD 9q32

chr9:114715997-114937465

rs4246905

TNFSF15 TNFSF8 TNC

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
9q32	chr9:114715997-114937465	rs4246905 C>T	2.80e-32^C	1.14 (1.11-1.18)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4246905	CRO		6.81e-23	1.14	G
rs4246905	IBD	017	2.33e-16	1.14	G
rs4246905	UC	024	1.48e-10	1.14	G
rs4246905	CRO	021	2.62e-13	1.15	G
rs4246905	UC		1.04e-15	1.12	G
rs4246905 C>T	UC	029	5.65e-12^C

Genes

Protein-coding Genes TNFSF8 TNFSF15
Non-coding Genes RP11-428F18.2 RP11-78H18.2 AL390240.1
Protein Coding Genes +/-0.5Mb of Region ATP6V1G1 ORM2 ORM1 C9orf91 AKNA COL27A1 DFNB31 DEC1 TNC
Non-coding Genes +/-0.5Mb of Region RP11-402G3.5 RP11-402G3.3 RP11-9M16.2 RP11-402G3.6 Y_RNA RP11-9M16.3 RP11-402G3.4 RP11-445L6.3 RP11-523L1.2

IBD 9q34.3

chr9:136243135-136514725

rs10781499

SDCCAG3 INPP5E CARD9 PMPCA

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
9q34.3	chr9:136243135-136514725	rs10781499 G>A	4.38e-56^C	1.19 (1.15-1.22)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs10781499	CRO	021	8.52e-30	1.21	A
rs10781499	UC	024	7.88e-17	1.16	A
rs10781499 G>A	IBD	017	4.38e-56^C	1.19 (1.15-1.22)^C	A
rs10781499 G>A	UC	029	2.62e-19^C

Genes

Protein-coding Genes CR392000.1 INPP5E GPSM1 SEC16A DNLZ NOTCH1 CCDC187 SDCCAG3 SNAPC4 CARD9 PMPCA QSOX2
Non-coding Genes DKFZP434A062 WI2-1959D15.1 C9orf163
Protein Coding Genes +/-0.5Mb of Region LHX3 C9orf69 CAMSAP1 NACC2 UBAC1 KCNT1 MAMDC4 FAM69B ABCA2 RABL6 TMEM141 LCN8 CLIC3 AGPAT2 LCN6 RP11-216L13.16 LCN12 TRAF2 FBXW5 LCN15 LCNL1 C9orf142 RABL6 LCN10 EGFL7 RP11-216L13.17 PHPT1 CCDC183 PTGDS C9orf172 C8G EDF1
Non-coding Genes +/-0.5Mb of Region RP11-432J22.2 RP11-83N9.6 RP11-83N9.5 NALT1 MIR4292 LINC01451 SNORA17A CCDC183-AS1 SNORA17B RP11-216L13.21 RP11-216L13.19 NCLP1 RP11-229P13.25 RP11-229P13.19 MIR4479 SNHG7 SNORA17B ATP6V1G1P3 RP11-229P13.2 PRR31 MIR4673 MIR126 SNORA17 RP11-413M3.4 RP11-216L13.18 RP11-251M1.1 MIR6722 MIR4674 AL590226.1

IBD 10q21.1

chr10:58064134-58408714

rs2790216

CISD1 IPMK

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
10q21.1	chr10:58064134-58408714	rs2790216 G>A	1.60e-07^C	1.06 (1.03-1.1)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2790216 G>A	IBD	017	1.60e-07^C	1.06 (1.03-1.1)^C	G
rs2790216 G>A	CRO	021	8.07e-09^C	1.08 (1.03-1.12)^C	G

Genes

Protein-coding Genes IPMK CISD1 UBE2D1 TFAM
Non-coding Genes TPT1P10 RP11-179B15.6 RP11-179B15.5 RP11-123G9.1
Protein Coding Genes +/-0.5Mb of Region BICC1
Non-coding Genes +/-0.5Mb of Region RP11-448K10.1 MRPS35P3 FAM133CP AC012168.1 RN7SKP196

IBD 10q23.33

chr10:92439580-92742146

rs7911264

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
10q23.33	chr10:92439580-92742146	rs7911264 C>T	2.98e-08^C	1.06 (1.03-1.1)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7911264 C>T	IBD	017	2.98e-08^C	1.06 (1.03-1.1)^C	C
rs7911264 C>T	UC	024	1.19e-07^C	1.09 (1.04-1.12)^C	C

Genes

Protein-coding Genes KIF11 HHEX IDE
Non-coding Genes Y_RNA RN7SL644P AL161652.1 RP11-366I13.3 EIF2S2P3
Protein Coding Genes +/-0.5Mb of Region BTAF1 MARCH5 CPEB3 CYP26C1 EXOC6 CYP26A1
Non-coding Genes +/-0.5Mb of Region Y_RNA AL158040.1 CPEB3_ribozyme RNY3P12 MARK2P9 SNORA25 SDHCP2 EIF4A1P8 NHP2P1 RP11-477L16.2 RP11-348J12.2 RP11-348J12.5 NIP7P1 XRCC6P1

IBD 10p11.23

chr10:30398004-30522007

rs1042058

MAP3K8

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
10p11.23	chr10:30398004-30522007	rs1042058 C>T	2.10e-10^C	1.08 (1.04-1.11)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1042058	CRO		1.60e-09	1.08	G
rs1042058 C>T	CRO	021	5.93e-11^C	1.09 (1.05-1.12)^C	C
rs1042058 C>T	IBD	017	2.10e-10^C	1.08 (1.04-1.11)^C	C

Genes

Protein-coding Genes MAP3K8
Non-coding Genes CCND3P1 HNRNPA1P32
Protein Coding Genes +/-0.5Mb of Region MTPAP KIAA1462 LYZL2 ZNF438
Non-coding Genes +/-0.5Mb of Region GOLGA2P6 EEF1A1P39 NIFKP1 MIR7162 RP11-305E6.4 DNM1P17 RN7SL241P RP11-449I17.9 RNU6-598P AL161651.1 RP11-253D19.1 DDX10P1 RP11-253D19.2 SVILP1 RP11-330O11.3 RN7SL63P RP11-14C22.3 RP11-14C22.6

IBD 10p11.21

chr10:34887225-35588558

rs11010067

CREM

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
10p11.21	chr10:34887225-35588558	rs11010067 C>G	6.72e-23^C	1.12 (1.08-1.15)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11010067	CRO	021	1.42e-17	1.16	G
rs11010067 C>G	UC	024	4.45e-09^C	1.07 (1.03-1.11)^C	G
rs11010067 C>G	IBD	017	6.72e-23^C	1.12 (1.08-1.15)^C	G

Genes

Protein-coding Genes CCNY CREM CUL2
Non-coding Genes MIR3611 PRDX2P2 RP11-324I22.3 ATP6V1G1P4 RP11-324I22.2 RP11-297A16.4 RNU6-847P RNU6-794P RNU6-1167P RNU7-77P RP11-297A16.2 RP11-324I22.4 RNU6-193P
Protein Coding Genes +/-0.5Mb of Region PARD3 GJD4 FZD8
Non-coding Genes +/-0.5Mb of Region TCEB2P4 RP11-8L18.2 PARD3-AS1 SS18L2P1 RP11-8L18.3 RP11-309N24.1 RPL7P37 RP11-425A6.5 PCAT5 MIR4683

IBD 10p15.1

chr10:5987834-6098857

rs12722515

IL15RA IL2RA

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
10p15.1	chr10:5987834-6098857	rs12722515 C>A	5.82e-09^C	1.1 (1.06-1.15)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs12722515	MS	030	1.98e-15	1.20	C
rs12722515	CRO		8.02e-13	1.13	C
rs12722515 C>A	CRO	021	3.76e-10^C	1.12 (1.08-1.18)^C	C
rs12722515 C>A	IBD	017	5.82e-09^C	1.1 (1.06-1.15)^C	C

Genes

Protein-coding Genes RBM17 IL2RA
Non-coding Genes SNORA14 RP11-414H17.2 RP11-536K7.5
Protein Coding Genes +/-0.5Mb of Region ANKRD16 FAM208B IL15RA GDI2 CALML3 CALML5 ASB13 FBXO18 PFKFB3 PRKCQ
Non-coding Genes +/-0.5Mb of Region RP11-116G8.5 RP11-336A10.2 RN7SL445P CALML3-AS1 RP11-536K7.3 RP11-336A10.5 NRBF2P5 RPL12P28 RP13-463N16.6 RP11-336A10.4 RP11-336A10.7 RP11-318E3.9 Y_RNA RP11-563J2.2 MIR3155A SDCBPP1 RP11-563J2.3 PRKCQ-AS1 RN7SKP78 RP11-414H17.5

IBD 10q22.3

chr10:79237086-79312766

rs1250546

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
10q22.3	chr10:79237086-79312766	rs1250546 A>G	8.28e-15^C	1.1 (1.06-1.12)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1250546	CRO	021	6.51e-13	1.13	A
rs1250546	IBD	017	4.44e-10	1.10	A
rs1250546	CEL	009	2.32e-13	1.15	A
rs1250546 A>G	PSO	016	6.80e-07^C	1.1^D	A

Genes

Protein-coding Genes ZMIZ1
Non-coding Genes
Protein Coding Genes +/-0.5Mb of Region NUTM2B ZCCHC24 SFTPA1 SFTPA2 PPIF EIF5AL1
Non-coding Genes +/-0.5Mb of Region RP11-481G8.2 ZMIZ1-AS1 TPRX1P1 NUTM2B-AS1 RP11-589B3.6 RP11-506M13.3 BEND3P3 RP11-119F19.4 RP11-342M3.1 MBL3P SFTPA3P RP11-342M3.5 RP11-342M3.2 RP11-589B3.7 RPS12P18 RP11-182L21.5 RP11-119F19.5

IBD 10q23.1

chr10:80326790-80603584

rs6586030

FAM213A TSPAN14

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
10q23.1	chr10:80326790-80603584	rs6586030 G>A	1.27e-14^C	1.11 (1.08-1.15)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6586030 G>A	CRO	021	9.24e-16^C	1.15 (1.1-1.19)^C	G
rs6586030 G>A	IBD	017	1.27e-14^C	1.11 (1.08-1.15)^C	G

Genes

Protein-coding Genes DYDC1 TSPAN14 SH2D4B DYDC2 FAM213A
Non-coding Genes RP11-36D19.8 RP11-137H2.4
Protein Coding Genes +/-0.5Mb of Region MAT1A TMEM254 ANXA11 NUTM2E PLAC9 SFTPD
Non-coding Genes +/-0.5Mb of Region PGGT1BP2 ZNRF2P3 BMS1P21 RP11-369J21.12 RP11-182L21.6 NPAP1P2 SFTPD-AS1 Metazoa_SRP EIF5AP4 MBL1P RP11-479O17.9 RP11-369J21.11 C1DP2 RP11-369J21.13 RPS12P2 RP11-40F6.1 LINC00857 CTSLP6 DPY19L2P5 C1DP3 C1DP4 TMEM254-AS1 RPL22P18 RP11-36D19.9 ZNF519P1 FARSBP1 RP11-514F8.2 RP11-20E23.1 RPS7P9 WARS2P1

IBD 10q24.2

chr10:99508770-99570210

rs4409764

NKX2-3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
10q24.2	chr10:99508770-99570210	rs4409764 G>T	1.03e-54^C	1.18 (1.15-1.22)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4409764	CRO		6.06e-47	1.19	A
rs4409764	UC		2.13e-36	1.17	A
rs4409764 G>T	CRO	011	2.29e-20^D	1.22 (1.17-1.27)^D	T
rs4409764 G>T	CRO	021	1.80e-41^C	1.18 (1.14-1.22)^C	T
rs4409764 G>T	UC	024	1.14e-33^C	1.18 (1.14-1.22)^C	T
rs4409764 G>T	IBD	017	1.03e-54^C	1.18 (1.15-1.22)^C	T

Genes

Protein-coding Genes NKX2-3
Non-coding Genes LINC01475 RP11-129J12.1
Protein Coding Genes +/-0.5Mb of Region HPSE2 CNNM1 GOT1 ENTPD7 ABCC2 COX15 CPN1 CUTC SLC25A28 DNMBP
Non-coding Genes +/-0.5Mb of Region ARL5AP2 U7 RPL7P36 RP11-441O15.3 NANOGP6 RP11-483F11.7 DNMBP-AS1 EBAG9P1 RP11-85A1.3

IBD 10q22.2

chr10:73639542-73945471

rs2227564

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
10q22.2	chr10:73639542-73945471	rs2227564 C>T	6.65e-06^C	1.09 (1.05-1.12)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2227564 C>T	IBD	017	6.65e-06^C	1.09 (1.05-1.12)^C	C
rs2227564 C>T	CRO	021	6.75e-10^C	1.1 (1.06-1.15)^C	C

Genes

Protein-coding Genes CHCHD1 CAMK2G FUT11 SEC24C SYNPO2L MYOZ1 NDST2 ZSWIM8 PLAU RP11-574K11.31 AGAP5 C10orf55
Non-coding Genes BMS1P4 RP11-574K11.32 ZSWIM8-AS1 RP11-464F9.1 GLUD1P3 RP11-574K11.27 RP11-464F9.21 DUSP8P5 RP11-574K11.26 RP11-574K11.5 RP11-574K11.8 BMS1P4 RNA5SP320 RP11-574K11.24 RP11-574K11.29
Protein Coding Genes +/-0.5Mb of Region MSS51 ANXA7 USP54 DNAJC9 PPP3CB MRPS16 FAM149B1 CFAP70 ECD ADK VCL AP3M1
Non-coding Genes +/-0.5Mb of Region RP11-137L10.5 RP11-464F9.22 RP11-152N13.5 Y_RNA RP11-537A6.9 RP11-345K20.2 AL353731.1 RNU6-833P RNU6-883P Y_RNA RP11-464F9.20 DNAJC9-AS1 EIF4A2P2 PPP3CB-AS1 RAB5CP1 RP11-417O11.5 TIMM9P1 RPSAP6

IBD 10q21.2

chr10:62581266-62866159

rs10761659

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
10q21.2	chr10:62581266-62866159	rs10761659 G>A	8.47e-45^C	1.16 (1.14-1.2)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs10761659	IBD	017	3.20e-26	1.17	G
rs10761659	UC		1.50e-20	1.12	G
rs10761659 G>A	UC	024	4.95e-17^C	1.12 (1.09-1.16)^C	G
rs10761659 G>A	CRO	011	4.37e-22^D	1.23 (1.18-1.28)^D	G
rs10761659 G>A	CRO	005	1.75e-06^D	1.23 (1.05-1.45)^D	G
rs10761659 G>A	CRO	021	6.37e-46^C	1.2 (1.16-1.25)^C	G

Genes

Protein-coding Genes ADO EGR2 ZNF365
Non-coding Genes RP11-436D10.3 ALDH7A1P4
Protein Coding Genes +/-0.5Mb of Region RTKN2 ARID5B JMJD1C NRBF2
Non-coding Genes +/-0.5Mb of Region RN7SL591P AL671972.1 RP11-120C12.3 RNU6-543P RP11-351O1.4 TATDN1P1 RP11-144G16.1

IBD 11p15.5

chr11:1845142-1946041

rs907611

TNNI2 LSP1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11p15.5	chr11:1845142-1946041	rs907611 G>A	2.70e-10^C	1.07 (1.04-1.10)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs907611	UC		1.00e-08	1.08	A
rs907611 G>A	UC	029	1.38e-10^C
rs907611 G>A	UC	024	8.85e-10^C	1.08 (1.04-1.12)^C	A
rs907611 G>A	IBD	017	2.70e-10^C	1.07 (1.04-1.10)^C	A

Genes

Protein-coding Genes TNNT3 LSP1 PRR33
Non-coding Genes MIR7847 AC051649.12 LINC01150 MIR4298
Protein Coding Genes +/-0.5Mb of Region KRTAP5-1 KRTAP5-2 IFITM10 SYT8 AP006285.2 KRTAP5-5 KRTAP5-3 BRSK2 MOB2 TNNI2 DUSP8 KRTAP5-4 KRTAP5-6 CTSD RP11-295K3.1 MRPL23 TH TSSC4 TRPM5 IGF2 INS-IGF2 C11orf21 KCNQ1 INS TSPAN32 CD81 ASCL2
Non-coding Genes +/-0.5Mb of Region AP006285.6 AC068580.5 AC068580.1 FAM99A AP006285.7 RPL36AP39 AC139143.2 FAM99B AC068580.6 AC068580.7 KRTAP5-AS1 H19_3 RPL26P30 MIR4686 RNU6-878P AC124057.5 LINC01219 MRPL23-AS1 H19 MIR483 IGF2-AS CD81-AS1 MIR675 H19_2 H19_1 AC132217.4 Y_RNA

IBD 11q23.3

chr11:118606652-118952438

rs630923

CXCR5

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11q23.3	chr11:118606652-118952438	rs630923 C>A	2.63e-06^C	1.08 (1.04-1.11)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs630923 C>A	MS	007	2.80e-07^C	1.11 (1.06-1.18)^D	C
rs630923 C>A	MS	044	4.70e-10^C	1.12^D	C
rs630923 C>A	IBD	017	2.63e-06^C	1.08 (1.04-1.11)^C	C
rs630923 C>A	CRO	021	7.07e-09^C	1.09 (1.05-1.14)^C	C

Genes

Protein-coding Genes BCL9L TREH PHLDB1 CXCR5 UPK2 DDX6
Non-coding Genes RP11-158I9.1 TREHP1 AP002954.3 AP002954.4 RP11-158I9.5 RP11-158I9.8 SETP16 Y_RNA MIR4492 MIR6716 RN7SL688P RNU6-376P
Protein Coding Genes +/-0.5Mb of Region UBE4A MPZL2 MPZL3 TMPRSS4 ATP5L KMT2A IFT46 CD3G SCN2B CD3E SCN4B CD3D ARCN1 TMEM25 JAML TTC36 HINFP SLC37A4 H2AFX ABCG4 C2CD2L HYOU1 C1QTNF5 USP2 CCDC84 RNF26 THY1 CCDC153 VPS11 NLRX1 MCAM DPAGT1 CBL MFRP HMBS RPS25 TRAPPC4 PDZD3 FOXR1
Non-coding Genes +/-0.5Mb of Region RP11-770J1.7 RP11-215H18.5 RP11-770J1.5 RNU6-1157P RP11-770J1.3 RP11-832A4.7 RPL5P30 HSPE1P18 RP11-770J1.4 Y_RNA MIR3656 MIR6756 ACA64 RP11-110I1.12 RPL23AP64 RP11-110I1.11 RP11-110I1.6 AP003391.1 RP11-334E6.2 DUXAP5 RP11-110I1.5 RP11-110I1.13 RP11-334E6.10 Metazoa_SRP RP11-110I1.14 RP11-334E6.3 USP2-AS1 RP11-334E6.4 RP11-334E6.12 RNU6-262P

IBD 11q13.1

chr11:65604133-66296655

rs2231884

SNX32 CTSW RELA FOSL1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11q13.1	chr11:65604133-66296655	rs2231884 C>T	2.96e-06^C	1.08 (1.04-1.12)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2231884 C>T	CRO	021	2.91e-10^C	1.12 (1.07-1.16)^C	T
rs2231884 C>T	IBD	017	2.96e-06^C	1.08 (1.04-1.12)^C	T

Genes

Protein-coding Genes EFEMP2 FOSL1 FIBP GAL3ST3 CTSW OVOL1 MAP3K11 DRAP1 EIF1AD SIPA1 KAT5 AP5B1 C11orf68 PACS1 SF3B2 RNASEH2C MUS81 RAB1B PCNXL3 CST6 KLC2 CFL1 SART1 CCDC85B YIF1A TMEM151A CATSPER1 SNX32 CNIH2 RELA BANF1 TSGA10IP
Non-coding Genes RN7SL309P RP11-1167A19.2 MIR4489 RP11-755F10.3 RP11-755F10.1 RP11-867G23.3 Metazoa_SRP KRT8P26 RP11-867G23.2 RP11-770G2.2 RP11-770G2.5 AP001107.1 RP11-867G23.1 RP11-867G23.4 RP11-1167A19.6 OVOL1-AS1 MIR4690
Protein Coding Genes +/-0.5Mb of Region CAPN1 FAM89B FRMD8 SYVN1 MRPL49 KCNK7 EHBP1L1 FAU TIGD3 TM7SF2 VPS51 DPF2 SPDYC ZNHIT2 CDC42EP2 AP000769.1 POLA2 SCYL1 SLC25A45 LTBP3 SSSCA1 RBM4 BBS1 RBM4B CCDC87 SLC29A2 ZDHHC24 RBM14-RBM4 CD248 CTSF RBM14 PELI3 MRPL11 NPAS4 B4GAT1 SPTBN2 RIN1 CCS DPP3 CTD-3074O7.11 BRMS1 ACTN3 C11orf80
Non-coding Genes +/-0.5Mb of Region AP003068.9 AP003068.23 RP11-867O8.5 AP000769.7 MIR6751 AP003068.12 PDCL2P2 CMB9-22P13.2 RP11-856B14.10 SSSCA1-AS1 MALAT1 RP11-399J13.2 HIGD1AP10 RNU2-23P CMB9-22P13.1 mascRNA-menRNA SNRPGP19 MALAT1 NEAT1_1 mascRNA-menRNA NEAT1_2 AP003068.18 PGAM1P8 AP000944.1 NEAT1 SLC22A20 MIR612 NEAT1_3 RP11-867G23.12 RP11-867G23.8 CTD-3074O7.2 FTLP6 BRD9P1 RP11-867G23.10 RNU4-39P Metazoa_SRP RP11-658F2.8 RP11-867G23.13 RNU1-84P CTD-3074O7.7 RN7SL12P C1QBPP2 CTD-3074O7.5 SNORA43

IBD 11q13.5

chr11:76324636-76632292

rs2155219

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11q13.5	chr11:76324636-76632292	rs2155219 T>G	4.24e-36^C	1.15 (1.12-1.19)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2155219	UC	024	1.92e-08	1.11	A
rs2155219 T>G	IBD	017	4.24e-36^C	1.15 (1.12-1.19)^C	T
rs2155219 G>T	AA	045	4.10e-08^C	1.21^C	T
rs2155219 G>T	IGE	049	1.40e-18^C	1.20 (1.14-1.24)^D	T
rs2155219 T>G	UC	029	5.39e-16^C
rs2155219 T>G	CRO	021	9.56e-36^C	1.19 (1.15-1.23)^C	T

Genes

Protein-coding Genes EMSY RP11-111M22.2 PRKRIR
Non-coding Genes RP11-672A2.5 RP11-111M22.3 RP11-111M22.5 RP11-672A2.7 Y_RNA RP11-111M22.4 RP11-672A2.6
Protein Coding Genes +/-0.5Mb of Region UVRAG WNT11 ACER3 OMP TSKU CAPN5 LRRC32 MYO7A B3GNT6
Non-coding Genes +/-0.5Mb of Region RP11-263C24.1 RP11-263C24.3 CTD-2011F17.2 RP11-619A14.3 Y_RNA RP11-619A14.2 RNA5SP344 Y_RNA PPP1R1AP1 RP11-672A2.3 RP11-21L23.4 RP11-21L23.2 RP11-21L23.3 RP11-672A2.4 GUCY2EP RP11-672A2.1 AP002498.1 AP001189.4 CTD-2547H18.1

IBD 11q23.2

chr11:114386027-114704768

rs561722

NXPE1 NXPE4

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11q23.2	chr11:114386027-114704768	rs561722 C>T	4.61e-08^C	1.05 (1.02-1.09)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs561722 C>T	UC	024	5.15e-17^C	1.12 (1.08-1.16)^C	C
rs561722 C>T	IBD	017	4.61e-08^C	1.05 (1.02-1.09)^C	C

Genes

Protein-coding Genes RBM7 REXO2 NXPE1 NXPE2 C11orf71 C11orf71 NXPE4 RP11-212D19.4
Non-coding Genes snoU13 RP11-172C16.4 RP11-212D19.5 NXPE2P1 RP11-172C16.5
Protein Coding Genes +/-0.5Mb of Region HTR3A NNMT HTR3B ZBTB16 CADM1
Non-coding Genes +/-0.5Mb of Region AP002518.1 AP000908.1 RP11-64D24.2 RP11-64D24.4 ACA59

IBD 11q12.2

chr11:60962649-61068645

rs11230563

PTGDR2 CD5 CD6

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11q12.2	chr11:60962649-61068645	rs11230563 C>T	9.03e-13^C	1.09 (1.05-1.12)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11230563 C>T	IBD	017	9.03e-13^C	1.09 (1.05-1.12)^C	C
rs11230563 C>T	CRO	021	1.89e-10^C	1.09 (1.05-1.14)^C	C
rs11230563 C>T	UC	024	4.97e-07^C	1.08 (1.03-1.11)^C	C

Genes

Protein-coding Genes CD6
Non-coding Genes RNU6-933P RP11-881M11.8
Protein Coding Genes +/-0.5Mb of Region MS4A10 MS4A15 TMEM109 SLC15A3 MS4A18 CCDC86 PTGDR2 PRPF19 ZP1 MS4A12 MS4A13 MS4A8 TMEM132A MS4A1 TMEM216 SDHAF2 VWCE TMEM138 VPS37C TKFC CYB561A3 PPP1R32 PGA4 PGA5 SYT7 RP11-286N22.8 CPSF7 LRRC10B PGA3 CD5 DDB1
Non-coding Genes +/-0.5Mb of Region RP11-881M11.1 RP11-881M11.4 RP11-804A23.2 RP11-804A23.1 RP11-804A23.4 RP11-881M11.2 LINC00301 RN7SL23P RP11-286N22.16 RP11-286N22.14 CTD-2331C18.5 RP11-286N22.10 MIR4488 AP000437.3 RP11-286N22.6 RP11-794G24.1

IBD 11q12.1

chr11:58132360-58690335

rs10896794

LPXN CNTF

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11q12.1	chr11:58132360-58690335	rs10896794 T>C	6.80e-10^C	1.08 (1.04-1.11)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs10896794 T>C	IBD	017	6.80e-10^C	1.08 (1.04-1.11)^C	T
rs10896794 T>C	UC	024	1.17e-07^C	1.08 (1.03-1.11)^C	T

Genes

Protein-coding Genes LPXN OR5B2 OR10W1 GLYAT OR5B21 ZFP91 OR1S1 OR9Q1 OR5B17 OR9Q2 OR1S2 ZFP91-CNTF OR5B3 OR10Q1 CNTF OR5B12
Non-coding Genes OR9I2P OR5B19P OR5B1P RP11-655C2.3 OR5B15P AP000445.3 OR5BL1P OR5B10P OR1S1 EIF4A2P3 CMB9-55A18.1 AP001350.4 OR10Q2P OR5BC1P AP000435.3 AP000445.1
Protein Coding Genes +/-0.5Mb of Region BTBD18 YPEL4 TMX2 OR6Q1 C11orf31 ZDHHC5 MED19 TMX2-CTNND1 RP11-691N7.6 OR9I1 CLP1 CTNND1 GLYATL1 FAM111A GLYATL1P3 DTX4 FAM111B GLYATL2
Non-coding Genes +/-0.5Mb of Region AP000662.4 MIR130A RNU6-899P AP000662.9 OR5BA1P OR5AZ1P OR6Q1 RP11-659P15.1 RP11-659P15.2 OR9L1P OR9I3P RP11-734C14.2 CYCSP26 VN2R9P OR5BD1P RP11-780O24.2 AP001258.5 GLYATL1P2 GLYATL1P1 TMA16P1 AP001258.4 RP11-142C4.6 RP11-142C4.5 GLYATL1P4 AP000445.2 RP11-142C4.4

IBD 11q13.1

chr11:64081858-64457156

rs559928

FLRT1 TRPT1 CCDC88B RPS6KA4

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11q13.1	chr11:64081858-64457156	rs559928 C>T	4.19e-11^C	1.1 (1.06-1.14)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs559928	CRO		3.75e-10	1.10	G
rs559928 C>T	IBD	017	4.19e-11^C	1.1 (1.06-1.14)^C	C
rs559928 C>T	UC	024	1.71e-06^C	1.11 (1.06-1.16)^C	C
rs559928 C>T	CRO	021	4.22e-09^C	1.09 (1.04-1.14)^C	C

Genes

Protein-coding Genes RPS6KA4 KCNK4 FERMT3 BAD GPR137 FLRT1 PLCB3 VEGFB TEX40 TRMT112 ESRRA NUDT22 PRDX5 TRPT1 DNAJC4 CCDC88B MACROD1 FKBP2 STIP1 PPP1R14B
Non-coding Genes KCNK4-TEX40 AP001453.1 AP003774.6 RP11-21A7A.2 RP11-21A7A.4 RP11-783K16.13 RP11-783K16.5 AP003774.5 MIR1237 RP11-21A7A.3 RP11-783K16.14 AP003774.4 AP003774.1 MIR7155 Y_RNA
Protein Coding Genes +/-0.5Mb of Region MARK2 NAA40 RTN3 PLA2G16 AP000721.4 COX8A C11orf95 OTUB1 ATL3 C11orf84 RCOR2 SLC22A12 EHD1 CDC42BPG RASGRP2 MAP4K2 GPHA2 MEN1 NRXN2 ATG2A SLC22A11 PPP2R5B C11orf85 SF1 PYGM
Non-coding Genes +/-0.5Mb of Region RP11-697H9.2 RP11-697H9.5 RN7SL596P RP11-466C23.5 RNU6-1306P RP11-697H9.3 IMMP1LP1 AP000721.1 RNU6-45P MIR194-2HG AP001187.1 AP001462.6 AP001187.11 MIR6750 MIR194-2 MIR6749 AP005273.1 AP001092.4 AP006288.1 MIR192

IBD 11q12.2

chr11:61749438-61917078

rs4246215

FADS2 FADS1 MYRF

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11q12.2	chr11:61749438-61917078	rs4246215 G>T	1.49e-10^C	1.08 (1.05-1.11)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4246215 G>T	CRO	021	1.93e-15^C	1.11 (1.08-1.15)^C	T
rs4246215 G>T	IBD	017	1.49e-10^C	1.08 (1.05-1.11)^C	T

Genes

Protein-coding Genes FEN1 FADS1 FADS3 MYRF TMEM258 RAB3IL1 FADS2
Non-coding Genes MIR6746 MIR611 MIR1908 DKFZP434K028
Protein Coding Genes +/-0.5Mb of Region TMEM216 DAGLA SDHAF2 VWCE TMEM138 TKFC CYB561A3 PPP1R32 PGA5 SYT7 RP11-286N22.8 CPSF7 LRRC10B DDB1 SCGB1D1 SCGB1A1 SCGB1D2 SCGB1D4 ASRGL1 SCGB2A1 BEST1 FTH1 SCGB2A2 INCENP
Non-coding Genes +/-0.5Mb of Region RN7SL23P RP11-286N22.16 RPLP0P2 RP11-286N22.14 RP11-286N22.10 MIR4488 RP11-855O10.3 RP11-855O10.2 RP11-286N22.6 RP11-794G24.1 RP11-810P12.1 RP11-703H8.9 NPM1P35 AP003064.2 Metazoa_SRP EEF1DP8 RCC2P6 CTD-2531D15.5 RP11-810P12.6 RP11-703H8.7 RP11-810P12.7 RP11-810P12.5 RNU6-1243P

IBD 11q14.2

chr11:87236723-87522249

rs6592362

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
11q14.2	chr11:87236723-87522249	rs6592362 G>A	2.32e-08^C	1.08 (1.05-1.12)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6592362 G>A	IBD	017	2.32e-08^C	1.08 (1.05-1.12)^C	A
rs6592362 G>A	UC	024	7.84e-08^C	1.10 (1.05-1.14)^C	A

Genes

Protein-coding Genes TMEM135
Non-coding Genes CTD-2028E8.2 RP11-680L20.1 RP11-777F6.3 PSMA2P1 CTD-2028E8.1
Protein Coding Genes +/-0.5Mb of Region FZD4 PRSS23
Non-coding Genes +/-0.5Mb of Region RP11-648O15.2 OR7E13P RP11-648O15.1 RP11-736K20.6 HNRNPCP8 AP002967.1 AP000654.4 RP11-736K20.5 CTD-2005H7.2 AP000654.5 RP11-736K20.4 OR7E2P RP11-137O10.1 RP11-720D4.2 RP11-665E10.1 RP11-665E10.4 RP11-665E10.5 RP11-665E10.2 RP11-665E10.3 RP11-720D4.3 RNU6-1135P

IBD 12q12

chr12:40223113-40613085

rs11564258

LRRK2

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
12q12	chr12:40223113-40613085	rs11564258 G>A	5.04e-23^C	1.33 (1.22-1.46)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11564258	CRO	021	6.74e-14	1.46	A
rs11564258 G>A	CRO	011	6.17e-21^D	1.74 (1.55-1.95)^D	A
rs11564258 G>A	IBD	017	5.04e-23^C	1.33 (1.22-1.46)^C	A

Genes

Protein-coding Genes LRRK2
Non-coding Genes RP11-115F18.1 MUC19 AC079630.4 AC084290.2 RNU6-713P
Protein Coding Genes +/-0.5Mb of Region SLC2A13 C12orf40 CNTN1
Non-coding Genes +/-0.5Mb of Region RPL30P13 RP11-476D10.1 SNORA22 AC121336.1 AC079630.2 RP11-367O10.1 RP11-385G16.1

IBD 12q13.11

chr12:47788458-47837647

rs11168249

VDR

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
12q13.11	chr12:47788458-47837647	rs11168249 T>C	4.59e-08^C	1.05 (1.02-1.08)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11168249 T>C	IBD	017	4.59e-08^C	1.05 (1.02-1.08)^C	C
rs11168249 A>G	PSC	032	5.49e-09^D	1.15 (1.10-1.21)^D	G
rs11168249 T>C	UC	024	7.78e-09^C	1.08 (1.04-1.12)^C	C

Genes

Protein-coding Genes HDAC7
Non-coding Genes RP5-1057I20.5 RP5-1057I20.6 RP5-1057I20.2
Protein Coding Genes +/-0.5Mb of Region ENDOU SLC48A1 RAPGEF3 RPAP3 TMEM106C H1FNT SENP1 ASB8 COL2A1 ZNF641 PFKM CCDC184 OR10AD1 VDR
Non-coding Genes +/-0.5Mb of Region RP1-197B17.5 RP5-1057I20.4 RP1-197B17.7 RP11-493L12.6 RP11-493L12.5 RP1-90J4.3 RP3-432I18.1 RP1-90J4.1 RP1-90J4.2 RP1-197B17.4 RP1-197B17.3 SNORA64 CTD-2024F21.1 MIR4494 RP1-228P16.5 RP1-228P16.1 RP1-228P16.7 RP11-370I10.10 MIR6505 RP11-89H19.1 RP1-228P16.9 RP1-228P16.4 PHBP18 RNU6-1203P RP1-228P16.3 RP1-228P16.8 RP11-474C8.5 RP11-474C8.7 RP11-370I10.2 RP11-474C8.8 RP11-370I10.12 RP11-370I10.4 RP11-89H19.2 RP11-474C8.3

IBD 12q15

chr12:68036752-68116292

rs7134599

IL22 IFNG IL26

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
12q15	chr12:68036752-68116292	rs7134599 G>A	1.22e-22^C	1.10 (1.06-1.13)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7134599 G>A	UC	024	8.51e-32^C	1.16 (1.12-1.20)^C	A
rs7134599 G>A	IBD	017	1.22e-22^C	1.10 (1.06-1.13)^C	A
rs7134599 G>A	UC	029	1.06e-16^D	1.19 (1.14-1.24)^D	A

Genes

Protein-coding Genes
Non-coding Genes IFNG-AS1 HNRNPA1P70
Protein Coding Genes +/-0.5Mb of Region DYRK2 IL26 MDM1 RAP1B IL22 IFNG
Non-coding Genes +/-0.5Mb of Region RP11-335O4.3 LINC01479 RP11-542B15.1 RP11-335O4.1 RP11-43N5.2 RP11-43N5.1 GS1-410F4.5 RPL39P28 RP11-71J4.2 RP11-444B24.2 RPSAP12 Metazoa_SRP RP11-81H14.2 RP11-81H14.3 RP11-81H14.4 RP11-81H14.1

IBD 12p13.2

chr12:12384138-12579426

rs11612508

BORCS5

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
12p13.2	chr12:12384138-12579426	rs11612508 A>G	2.56e-06^C	1.06 (1.03-1.09)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11612508 A>G	UC	024	1.06e-08^C	1.09 (1.04-1.13)^C	G
rs11612508 A>G	IBD	017	2.56e-06^C	1.06 (1.03-1.09)^C	G

Genes

Protein-coding Genes BORCS5 DUSP16
Non-coding Genes RP11-253I19.3 RP11-158N24.1 RP11-253I19.4
Protein Coding Genes +/-0.5Mb of Region MANSC1 BCL2L14 ETV6 LRP6 CDKN1B DDX47 GPR19 GPRC5D APOLD1 GPRC5A HEBP1 CREBL2 FAM234B
Non-coding Genes +/-0.5Mb of Region RPL23AP66 RP11-757G14.3 RNU6-545P RP11-267J23.4 RP11-267J23.1 LOH12CR2 RNU6-318P RPL21P136 HTR7P1 MIR613 RPL13AP20 RP11-180M15.6 RP11-377D9.3 RP11-377D9.1 RP11-392P7.1 RP11-180M15.4 RP11-59H1.1 RP11-392P7.7 RP11-392P7.6 MIR614 SNORD88 RP11-180M15.3 RP11-180M15.7 STX8P1

IBD 13q12.13

chr13:26932960-26990142

rs17085007

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
13q12.13	chr13:26932960-26990142	rs17085007 T>C	3.75e-13^C	1.11 (1.07-1.15)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs17085007 T>C	IBD	017	3.75e-13^C	1.11 (1.07-1.15)^C	C
rs17085007 T>C	UC	029	9.65e-17^C
rs17085007 T>C	UC	024	2.79e-19^C	1.17 (1.12-1.22)^C	C

Genes

Protein-coding Genes
Non-coding Genes RPS21P8
Protein Coding Genes +/-0.5Mb of Region GPR12 WASF3 RPL21 RASL11A USP12 GTF3A MTIF3
Non-coding Genes +/-0.5Mb of Region RPS3AP44 WASF3-AS1 FGFR1OP2P1 USP12-AS2 RP11-428O18.6 SNORA27 RNU6-63P RPS20P32 SNORD102 RP11-144H23.2 USP12-AS1 LINC01079 RNY1P1 LINC00412 AL159977.1 RNU6-70P

IBD 13q14.11

chr13:40435146-40471356

rs941823

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
13q14.11	chr13:40435146-40471356	rs941823 C>T	3.84e-10^C	1.08 (1.03-1.11)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs941823	UC		1.39e-13	1.11	G
rs941823 C>T	UC	024	2.95e-11^C	1.1 (1.05-1.15)^C	C
rs941823 C>T	IBD	017	3.84e-10^C	1.08 (1.03-1.11)^C	C
rs941823 C>T	UC	029	3.82e-12^C

Genes

Protein-coding Genes
Non-coding Genes LINC00598
Protein Coding Genes +/-0.5Mb of Region FOXO1 MRPS31 SLC25A15 ELF1
Non-coding Genes +/-0.5Mb of Region RP11-172E9.2 AL356217.1 RPL17P51 RP11-427J23.1 RNY3P9 LINC00332 LINC00548 RN7SKP2 Metazoa_SRP CYCSP34 MIR320D1 SUGT1P3 RLIMP1 MIR621 TPTE2P5

IBD 13q32.3

chr13:99110747-99432425

rs9557195

GPR18 GPR183

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
13q32.3	chr13:99110747-99432425	rs9557195 T>C	2.37e-14^C	1.11 (1.08-1.15)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs9557195 T>C	UC	024	1.68e-07^C	1.1 (1.05-1.15)^C	T
rs9557195 T>C	CRO	021	1.35e-12^C	1.12 (1.08-1.16)^C	T
rs9557195 T>C	IBD	017	2.37e-14^C	1.11 (1.08-1.15)^C	T

Genes

Protein-coding Genes UBAC2 GPR18 GPR183
Non-coding Genes GAPDHP22 H2AFZP3 HMGB3P4 RPS6P23 UBAC2-AS1 RN7SKP9 CCR12P MIR623
Protein Coding Genes +/-0.5Mb of Region DOCK9 SLC15A1 TM9SF2 CLYBL
Non-coding Genes +/-0.5Mb of Region DOCK9-AS2 NUS1P4 RN7SL60P DOCK9-AS1 RP11-155N3.4 RNU6-83P CYCSP35 CALM2P4 RPL7L1P12 AL583784.1 CLYBL-AS2 LINC01039 CFL1P8 MIR4306 RP11-214F16.8 SNORA25 LINC00449 CLYBL-AS1 LINC01232

IBD 13q14.11

chr13:43662130-44029117

rs3764147

LACC1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
13q14.11	chr13:43662130-44029117	rs3764147 A>G	5.63e-13^C	1.11 (1.07-1.15)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs3764147	IBD	017	8.35e-10	1.11	G
rs3764147	CRO	021	4.32e-14	1.16	G
rs3764147 A>G	CRO	011	1.41e-10^D	1.17 (1.12-1.23)^D	G

Genes

Protein-coding Genes CCDC122 LACC1 RP11-65B7.2 ENOX1
Non-coding Genes RP11-168P13.1 RP11-5G9.6 LINC00284 DGKZP1 RP11-5G9.5 AL512506.1
Protein Coding Genes +/-0.5Mb of Region TSC22D1 SERP2 SMIM2
Non-coding Genes +/-0.5Mb of Region RPL36P19 RP11-460G11.2 AL607148.1 ENOX1-AS2 ENOX1-AS1 MIR8079 TUSC8 RP11-269C23.5 SMIM2-AS1 RP11-478K15.7 AL139184.1 SMIM2-IT1 LINC00390 RP11-478K15.6 RP11-269C23.4 RP11-71C5.2

IBD 14q24.3

chr14:75204956-75283172

rs4899554

FOS MLH3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
14q24.3	chr14:75204956-75283172	rs4899554 C>T	3.39e-06^C	1.09 (1.04-1.12)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4899554 C>T	IBD	017	3.39e-06^C	1.09 (1.04-1.12)^C	C
rs4899554 C>T	CRO	021	2.71e-08^C	1.1 (1.05-1.15)^C	C

Genes

Protein-coding Genes FOS
Non-coding Genes RP11-293M10.1 RP11-293M10.2
Protein Coding Genes +/-0.5Mb of Region ZC2HC1C PROX2 DLST NEK9 EIF2B2 FCF1 PGF RPS6KL1 AREL1 TMED10 YLPM1 MLH3 ACYP1 FLVCR2 C14orf1 TTLL5 JDP2 BATF
Non-coding Genes +/-0.5Mb of Region CTD-3075F15.1 RNU4ATAC14P SNORA7 RNU6-689P RP11-316E14.2 RP11-950C14.3 RP11-950C14.10 HIF1AP1 RP11-950C14.7 RP11-293M10.6 AC007182.6 RP11-507E23.1 RNA5SP387 DPPA5P4 LINC01220

IBD 14q31.3

chr14:87863352-88175959

rs8005161

GALC GPR65

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
14q31.3	chr14:87863352-88175959	rs8005161 C>T	2.35e-14^C	1.15 (1.10-1.21)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs8005161	UC		2.80e-09	1.14	A
rs8005161	IBD	017	2.03e-08	1.15	A
rs8005161 C>T	UC	024	1.71e-08^C	1.14 (1.08-1.21)^C	T
rs8005161 C>T	CRO	011	4.20e-18^C	1.23 (1.16-1.31)^C	T
rs8005161 C>T	CRO	021	1.96e-12^C	1.16 (1.09-1.22)^C	T

Genes

Protein-coding Genes GPR65 GALC
Non-coding Genes RNU6-835P RP11-753D20.1 LINC01146 RP11-1152H15.1 RP11-300J18.1 RP11-753D20.4 RP11-753D20.3 RP11-300J18.2 FAM35CP
Protein Coding Genes +/-0.5Mb of Region PTPN21 KCNK10 ZC3H14 EML5 SPATA7
Non-coding Genes +/-0.5Mb of Region RP11-594C13.1 CTD-2007A10.1 RP11-804L24.2 RP11-325D8.1 RP11-507K2.3 RNU4-22P RP11-507K2.2 RP11-507K2.6

IBD 14q24.1

chr14:68696738-68851345

rs194749

ZFP36L1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
14q24.1	chr14:68696738-68851345	rs194749 T>C	3.86e-08^C	1.08 (1.04-1.11)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs194749 T>C	CRO	021	2.70e-10^C	1.09 (1.05-1.13)^C	C
rs194749 T>C	IBD	017	3.86e-08^C	1.08 (1.04-1.11)^C	C

Genes

Protein-coding Genes RAD51B ZFP36L1
Non-coding Genes RNU6-921P
Protein Coding Genes +/-0.5Mb of Region GALNT16 EXD2 DCAF5 ACTN1
Non-coding Genes +/-0.5Mb of Region RP11-204K16.1 PPIAP6 CTD-2325P2.3 CTD-2325P2.4 RN7SL108P RPL12P7 Y_RNA BLZF2P HMGN1P3 RP11-363J20.2 MAGOH3P BANF1P1 DDX18P1 RP11-817G13.3 ACTN1-AS1 RP11-226F19.1 RP11-363J20.1

IBD 15q26.1

chr15:90382489-90725453

rs7495132

CRTC3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
15q26.1	chr15:90382489-90725453	rs7495132 C>T	9.48e-11^C	1.14 (1.09-1.19)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7495132 C>T	UC	024	2.73e-07^C	1.12 (1.06-1.19)^C	C
rs7495132 C>T	IBD	017	9.48e-11^C	1.14 (1.09-1.19)^C	C
rs7495132 C>T	CRO	021	6.61e-08^C	1.14 (1.08-1.2)^C	C

Genes

Protein-coding Genes CRTC3 BLM IQGAP1
Non-coding Genes CTD-3065B20.3 LINC01585 CRTC3-AS1 HSPE1P3 NDUFA3P4 RP11-387D10.4 RP11-154B12.3 CTD-3065B20.2
Protein Coding Genes +/-0.5Mb of Region GDPGP1 ARPIN C15orf38-AP3S2 ZNF710 ZNF774 CIB1 RP11-697E2.12 SEMA4B IDH2 AP3S2 RP11-697E2.6 NGRN VPS33B FES FURIN HDDC3 PRC1 UNC45A SV2B RCCD1 MAN2A2
Non-coding Genes +/-0.5Mb of Region RP11-493E3.3 MIR5009 RNU6-1111P GABARAPL3 AC091167.2 GOLGA2P8 CTD-2315E11.1 RPS12P26 RN7SL736P AC091167.1 RP11-617F23.1 RP11-697E2.10 RP11-697E2.11 RP11-697E2.9 U7 RNU7-111P RP11-493E3.2 RN7SL346P TTLL13P MIR3174 GABARAPL3 RP11-617F23.2 RP11-697E2.7 SNORD18 AC068831.10 Y_RNA PRC1-AS1 CTD-3094K11.1 RN7SL363P AC068831.15 AC068831.16 AC068831.11 AC068831.3 AC068831.6 AC068831.17 AC068831.12

IBD 15q22.33

chr15:67120258-67176997

rs17293632

SMAD3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
15q22.33	chr15:67120258-67176997	rs17293632 C>T	5.92e-15^C	1.07 (1.03-1.10)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs17293632	CRO		3.70e-20	1.14	A
rs17293632 C>T	CRO	021	5.97e-16^C	1.10 (1.06-1.14)^C	T
rs17293632 C>T	CRO	011	2.70e-19^C	1.12 (1.07-1.16)^C	T
rs17293632 C>T	IBD	017	5.92e-15^C	1.07 (1.03-1.10)^C	T

Genes

Protein-coding Genes SMAD3
Non-coding Genes RP11-342M21.2
Protein Coding Genes +/-0.5Mb of Region SMAD6 IQCH AAGAB MAP2K5 C15orf61
Non-coding Genes +/-0.5Mb of Region RP11-622C24.2 RP11-798K3.4 RP11-798K3.2 RP11-321F6.2 RP11-798K3.3 RP11-622C24.1 HMGN2P47 LINC01169 HNRNPA1P5 RPS24P16 RP11-502I4.3 IQCH-AS1

IBD 16q12.1

chr16:50658453-50824433

rs2066847

NOD2 ADCY7

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
16q12.1	chr16:50658453-50824433	rs2066847 C>T	2.90e-69^C	1.30 (1.25-1.34)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2066847 C>T	IBD	017	2.90e-69^C	1.30 (1.25-1.34)^C	T
rs2066847 ->T	CRO	021	5.61e-166^C	1.56 (1.50-1.62)^C	T

Genes

Protein-coding Genes SNX20 NOD2 CYLD
Non-coding Genes RP11-327F22.4 RP11-327F22.1 MIR3181 RP11-327F22.5 RP11-327F22.2 RP11-327F22.6 RP11-401P9.5
Protein Coding Genes +/-0.5Mb of Region NKD1 ADCY7 BRD7 PAPD5 SALL1
Non-coding Genes +/-0.5Mb of Region RP11-401P9.1 RP11-21B23.2 RP11-401P9.7 MIR6771 RP11-401P9.4 RP11-21B23.3 RP11-401P9.6 RP11-21B23.1 RP11-883G14.3 RP11-883G14.4 SOD1P2 UNGP1 RNA5SP426 RP11-883G14.2 CTD-2034I21.1 CTD-2034I21.2 AC009166.7 AC137527.2 RP11-883G14.1 AC009166.5

IBD 16q22.1

chr16:68395991-68806685

rs1728785

ZFP90

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
16q22.1	chr16:68395991-68806685	rs1728785 C>A	4.43e-06^C	1.04 (1.0-1.08)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1728785 C>A	UC	024	3.71e-08^C	1.08 (1.03-1.12)^C	C
rs1728785 C>A	IBD	017	4.43e-06^C	1.04 (1.0-1.08)^C	C

Genes

Protein-coding Genes CDH1 CDH3 ZFP90 SMPD3
Non-coding Genes RNA5SP429 RP11-615I2.1 RP11-615I2.6 snoU109 RP11-615I2.2 HSPE1P5 RP11-615I2.3 RP11-71L14.4 RNU4-36P AC099314.1 snoU109 Y_RNA RPL35AP33
Protein Coding Genes +/-0.5Mb of Region ESRP2 LCAT SLC7A6OS DDX28 PSMB10 SLC7A6 DUS2 SLC12A4 CTC-479C5.12 PLA2G15 DPEP3 NFATC3 PRMT7 CTC-479C5.6 PSKH1 CTRL DPEP2 SNTB2 CHTF8 TANGO6 RP11-343C2.11 HAS3 UTP4
Non-coding Genes +/-0.5Mb of Region KARSP3 RP11-96D1.9 RPS12P27 RP11-96D1.10 RP11-96D1.3 RNU6-359P Y_RNA SNORA48 RP11-67A1.4 RP11-96D1.11 RP11-96D1.8 RP11-67A1.2 MIR6773 AC130462.1 RP11-96D1.6 RP11-96D1.7 RP11-71L14.3 RP11-96D1.5 RNU6-1262P RNU4-30P RP11-521L9.2 RPS2P45 RNU6-22P RP11-354M1.2 FTLP14 RP11-123C5.5 RP11-70O5.2 Y_RNA RP11-521L9.1 RNU6-898P Y_RNA U7

IBD 16q24.1

chr16:85949450-85990498

rs10521318

IRF8

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
16q24.1	chr16:85949450-85990498	rs10521318 C>T	1.41e-09^C	1.15 (1.1-1.22)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs10521318 C>T	CRO	021	1.92e-08^C	1.2 (1.14-1.28)^C	C
rs10521318 C>T	IBD	017	1.41e-09^C	1.15 (1.1-1.22)^C	C

Genes

Protein-coding Genes
Non-coding Genes RP11-542M13.2
Protein Coding Genes +/-0.5Mb of Region COX4I1 C16orf74 GSE1 EMC8 GINS2 IRF8
Non-coding Genes +/-0.5Mb of Region LA16c-352F7.1 RP11-568J23.1 MIR6774 RP11-542M13.3 RP11-118F19.1 RP11-568J23.8 RP11-568J23.7 RN7SL381P RP11-568J23.4 RP11-568J23.6 RP11-568J23.2 RNU1-103P CTD-2542L18.1 RP11-568J23.5 RP11-542M13.1 LINC01082 RP11-805I24.1 RP11-805I24.4 LINC00917 RP11-805I24.3 Y_RNA RP11-158I3.3 RP11-158I3.1 FENDRR RP11-514D23.2 RP11-514D23.3 RP11-514D23.1

IBD 16p11.2

chr16:28283985-29014657

rs26528

SULT1A2 RABEP2 EIF3C SULT1A1 IL27 NUPR1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
16p11.2	chr16:28283985-29014657	rs26528 T>C	4.69e-18^C	1.10 (1.07-1.13)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs26528	AS	026	4.17e-08	1.02	C
rs26528	IBD	017	8.61e-11	1.10	G
rs26528 T>C	CRO	021	9.65e-22^C	1.13 (1.10-1.17)^C	C

Genes

Protein-coding Genes RABEP2 SGF29 TUFM CD19 CLN3 SBK1 SH2B1 NPIPB9 NPIPB8 ATP2A1 SULT1A1 NPIPB7 EIF3C SULT1A2 SPNS1 EIF3CL NFATC2IP IL27 LAT NUPR1 RP11-435I10.4 NPIPB6 ATXN2L APOBR
Non-coding Genes RP11-1348G14.5 RP11-435I10.3 RP11-1348G14.7 RP11-1348G14.4 MIR6862-2 RP11-57A19.2 RP11-435I10.6 RP11-666O2.1 RP11-666O2.5 CDC37P1 RP11-264B17.5 AC109460.1 RP11-264B17.2 RP11-264B17.4 RP11-435I10.5 RP11-1348G14.6 MIR6862-1 RP11-1348G14.1 RP11-1348G14.8 RP11-24N18.1 SNORA43 MIR4721 RP11-57A19.6 RP11-666O2.2 RP11-666O2.4 MIR4517 RP11-57A19.5 RP11-57A19.4 RP11-22P6.2 RP11-264B17.3 ATP2A1-AS1
Protein Coding Genes +/-0.5Mb of Region XPO6 GSG1L RP11-231C14.4 RP11-345J4.3 RP11-345J4.5 SLX1B SULT1A4 BOLA2 NPIPB11
Non-coding Genes +/-0.5Mb of Region RNU6-1241P AC136611.1 RNY1P10 SNORA25 RP11-159J3.1 TPRKBP2 RNU6-159P RP11-426C22.4 RP11-426C22.7 RP11-231C14.6 RP11-345J4.1 CTB-134H23.2 CTB-134H23.3 RP11-345J4.6 RP11-231C14.5 SLX1B-SULT1A4 RP11-426C22.5 RP11-426C22.6 RP11-231C14.7 RP11-231C14.8 SMG1P6 RP11-426C22.1 SNX29P2 RP11-426C22.8 AC025279.1 RP11-345J4.4 RRN3P2

IBD 16p11.2

chr16:30135944-30542838

rs11150589

ITGAL

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
16p11.2	chr16:30135944-30542838	rs11150589 C>T	1.87e-06^C	1.05 (1.02-1.08)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11150589	UC		3.28e-10	1.08	A
rs11150589 C>T	UC	024	6.04e-10^C	1.09 (1.05-1.13)^C	T
rs11150589 C>T	IBD	017	1.87e-06^C	1.05 (1.02-1.08)^C	T

Genes

Protein-coding Genes RP11-347C12.3 DCTPP1 AC002310.11 CD2BP2 RP11-347C12.1 ZNF747 SEPT1 ZNF771 CORO1A SEPHS2 BOLA2B SULT1A3 TBC1D10B AC002310.13 SLX1A MYLPF ZNF48 ITGAL ZNF768
Non-coding Genes RP11-347C12.9 RP11-297C4.2 RNU7-61P SNORA42 RP11-347C12.8 RP11-347C12.11 AC106782.1 AC002310.14 AC002310.12 AC002310.10 RP11-347C12.4 SMG1P5 Y_RNA RP11-297C4.1 SLX1A-SULT1A3 RP11-455F5.5 RP11-297C4.3 RP11-347C12.10 MIR4518 RP11-297C4.6 RP11-347C12.12 Y_RNA
Protein Coding Genes +/-0.5Mb of Region SPN QPRT GDPD3 YPEL3 CTD-2574D22.6 PAGR1 CDIPT DOC2A MVP PPP4C SEZ6L2 MAPK3 TBX6 C16orf92 ZG16 PRRT2 C16orf54 HIRIP3 KIF22 AC009133.22 AC009133.23 MAZ INO80E KCTD13 TAOK2 TMEM219 ASPHD1 ALDOA FAM57B ZNF785 STX4 FBXL19 PHKG2 PRR14 CTF1 ZNF629 BCL7C TMEM265 ZNF764 ORAI3 STX1B RNF40 CCDC189 SRCAP HSD3B7 ZNF688 ZNF689 FBRS SETD1A RP11-2C24.9
Non-coding Genes +/-0.5Mb of Region RN7SKP127 CTD-2515O10.5 CA5AP1 AC009133.15 AC009133.24 RP11-455F5.4 RP11-455F5.3 AC009133.21 CTD-2574D22.4 AC009133.17 CTD-2574D22.7 RP11-455F5.6 CTD-2574D22.2 AC009133.12 CTD-2574D22.3 CDIPT-AS1 Metazoa_SRP MIR762 RP11-146F11.2 RNU6-1043P RP11-2C24.4 AC106782.20 RP11-2C24.5 CTF2P RP11-146F11.5 RP11-2C24.7 FBXL19-AS1 RP11-146F11.4 RNU6-416P RP11-146F11.1 RP11-1072A3.4 MIR4519 AC002310.7 AC002310.17 RP11-1072A3.3 AC093249.1 RP11-2C24.3 SNORA30 MIR762HG RP11-146F11.3 AC135048.13

IBD 16p13.13

chr16:11210761-11380893

rs529866

RMI2 SOCS1 LITAF

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
16p13.13	chr16:11210761-11380893	rs529866 C>T	1.49e-12^C	1.12 (1.09-1.16)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs529866	CRO	021	1.26e-13	1.17	G
rs529866	MS	030	1.13e-08	1.13	G
rs529866 C>T	IBD	017	1.49e-12^C	1.12 (1.09-1.16)^C	C

Genes

Protein-coding Genes AC009121.2 TNP2 PRM1 SOCS1 RMI2 PRM3 CTD-3088G3.8 PRM2
Non-coding Genes AC009121.1 HNRNPCP4 SNORA48 Y_RNA MIR548H2 RP11-485G7.6 CTD-3088G3.4 RP11-396B14.2 RP11-485G7.5
Protein Coding Genes +/-0.5Mb of Region NUBP1 CLEC16A TVP23A CIITA DEXI GSPT1 RSL1D1 ZC3H7A LITAF SNN TXNDC11
Non-coding Genes +/-0.5Mb of Region MTND5P33 MTATP6P24 RP11-876N24.3 RP11-876N24.4 MTND4LP24 MTCO3P24 RP11-876N24.1 RP11-876N24.7 RP11-876N24.5 RPL7P46 RP11-109M19.4 MTND3P13 RP11-66H6.3 MTND6P33 MTND4P34 RP11-876N24.2 RP11-66H6.4 Metazoa_SRP RP11-166B2.8 BCAR4 CTD-3088G3.6 RP11-490O6.2 RP11-486I11.2

IBD 16p12.2

chr16:23720685-23964030

rs7404095

PRKCB

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
16p12.2	chr16:23720685-23964030	rs7404095 C>T	9.68e-10^C	1.06 (1.03-1.09)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7404095 C>T	IBD	017	9.68e-10^C	1.06 (1.03-1.09)^C	C
rs7404095 C>T	UC	024	1.15e-08^C	1.06 (1.03-1.11)^C	C

Genes

Protein-coding Genes PRKCB CHP2
Non-coding Genes CTA-345G4.1 CTD-2385L22.2
Protein Coding Genes +/-0.5Mb of Region SCNN1B GGA2 ERN2 PALB2 PLK1 DCTN5 EARS2 COG7 UBFD1 NDUFAB1 CACNG3
Non-coding Genes +/-0.5Mb of Region RN7SKP23 CTD-2270L9.4 CTD-2196E14.6 CTD-2196E14.3 CTD-2196E14.9 CTD-2196E14.5 SUB1P4 CTD-2196E14.7 CTD-2270L9.2 AC002400.1 CTD-2196E14.8 CTD-2385L22.1 SNORA75 CTA-113A6.1 AC008938.1 CTA-113A6.2 RNU7-24P MIR1273H SNORA1 AC004125.3

IBD 17q12

chr17:39219977-40074859

rs12946510

ORMDL3 GSDMB IKZF3 GSDMA ZPBP2

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
17q12	chr17:39219977-40074859	rs12946510 C>T	4.10e-38^C	1.16 (1.12-1.19)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs12946510	UC		1.25e-25	1.14	A
rs12946510	CRO		1.97e-24	1.13	A
rs12946510	IBD	017	6.02e-24	1.16	A
rs12946510	UC	024	1.77e-17	1.16	A
rs12946510 C>T	CRO	021	3.58e-25^C	1.15 (1.12-1.19)^C	T
rs12946510 G>A	MS	030	2.90e-09^C	1.08^D	A

Genes

Protein-coding Genes MIEN1 GRB7 ORMDL3 CSF3 CDK12 STARD3 PNMT GSDMB TCAP FBXL20 NEUROD2 PPP1R1B IKZF3 ZPBP2 THRA PGAP3 MED1 GSDMA PSMD3 ERBB2 LRRC3C MED24 STAC2
Non-coding Genes KRT8P34 AC079199.2 SNORD124 CTB-131K11.1 MIR6884 MIR4728 RNU6-981P RP11-387H17.4 RP11-390P24.1 RP11-387H17.6 AC005288.1 AC087491.2 RP11-690G19.4 RNU6-233P
Protein Coding Genes +/-0.5Mb of Region AC006449.2 PSMB3 ARL5C C17orf98 MLLT6 CISD3 PIP4K2B PCGF2 CACNB1 LASP1 FBXO47 PLXDC1 RPL19 RPL23 CWC25 CASC3 CCR7 NR1D1 IGFBP4 TNS4 RAPGEFL1 WIPF2 TOP2A RARA GJD3 CDC6 MSL1
Non-coding Genes +/-0.5Mb of Region RNA5SP440 CTD-2206N4.5 RP5-906A24.1 RP5-906A24.2 MIR4727 RNU6-866P CTB-58E17.9 LINC00672 AC091178.2 SNORA21 CTB-58E17.5 MIR6779 SNORA21 RPS20P35 RP1-56K13.6 RP1-56K13.5 AC091178.1 LRRC37A11P CTD-2206N4.4 RP1-56K13.2 RP1-56K13.3 CTD-2206N4.1 CTD-2206N4.2 CTD-2267D19.3 Y_RNA RP11-749I16.3 CTD-2267D19.1 CTD-2267D19.4 RNA5SP441 AC068669.1 RPL23AP75 RP11-58O9.2 MIR6867 RARA-AS1 CTD-2267D19.7 RP5-1028K7.2

IBD 17q21.2

chr17:42156716-42774617

rs12942547

STAT3 STAT5A STAT5B

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
17q21.2	chr17:42156716-42774617	rs12942547 A>G	5.51e-22^C	1.1 (1.08-1.14)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs12942547	CRO	021	1.68e-10	1.11	A
rs12942547	CRO		1.01e-16	1.11	A
rs12942547 A>G	IBD	017	5.51e-22^C	1.1 (1.08-1.14)^C	A
rs12942547 A>G	UC	024	5.71e-11^C	1.09 (1.05-1.12)^C	A

Genes

Protein-coding Genes PSMC3IP STAT5A TUBG1 PTRF COASY STAT5B PLEKHH3 HCRT VPS25 STAT3 NAGLU EZH1 CNTNAP1 KCNH4 ATP6V0A1 CCR10 TUBG2 FAM134C HSD17B1 GHDC MLX RAMP2
Non-coding Genes MIR6780A RP11-358B23.7 CTD-3193K9.3 AC003104.1 MIR548AT AC107993.1 CTD-3193K9.1 MIR5010 RP11-358B23.6 HSD17B1P1 CTD-3193K9.11 RP11-400F19.12 CTD-3193K9.4 RP11-400F19.6 RNU7-97P RP11-400F19.18 RP11-400F19.8 ATP5LP7 HMGB3P27 RP11-194N12.2 PTP4A2P1 HMGN2P15 RP11-358B23.5 RAMP2-AS1
Protein Coding Genes +/-0.5Mb of Region ZNF385C HAP1 EIF1 DHX58 HSPB9 NKIRAS2 GAST KLHL11 TTC25 ACLY CTD-2132N18.3 RAB5C FKBP10 DNAJC7 KAT2A NT5C3B CNP JUP P3H4 KLHL10 AC055866.1 AARSD1 G6PC CNTD1 RUNDC1 RPL27 AOC3 PTGES3L VAT1 WNK4 PSME3 AOC2 COA3 PTGES3L-AARSD1 NBR1 TMEM106A IFI35 BRCA1 RND2 BECN1
Non-coding Genes +/-0.5Mb of Region CTD-2132N18.4 RP11-156E6.1 RP11-229E13.4 RP13-415G19.2 RN7SL399P RNA5SP442 RP11-358B23.1 CTD-2132N18.2 RNU6-287P RPL21P4 U2 U2 LINC00671 RNU2-1 NBR2 MIR6781 AOC4P RP11-242D8.1 LINC00854 U2 SNORA40 CTD-3199J23.6 RP11-242D8.2 RP11-242D8.3 U2 U2 U2 U2

IBD 17q23.1

chr17:59412005-59997425

rs1292053

RPS6KB1 TUBD1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
17q23.1	chr17:59412005-59997425	rs1292053 A>G	1.77e-10^C	1.08 (1.05-1.11)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1292053 A>G	CRO	021	8.85e-13^C	1.10 (1.06-1.13)^C	G
rs1292053 A>G	IBD	017	1.77e-10^C	1.08 (1.05-1.11)^C	G

Genes

Protein-coding Genes PTRH2 RP11-178C3.1 TUBD1 VMP1 RPS6KB1 DHX40 RNFT1 CLTC
Non-coding Genes RP11-758H9.2 RP11-619I22.1 DHX40P1 RP11-178C3.2 RNU4-13P NDUFB8P2 RP5-1073F15.1 RNU6-450P TBC1D3P1-DHX40P1 LINC01476 MIR21
Protein Coding Genes +/-0.5Mb of Region PPM1E SKA2 SMG8 CTD-2510F5.6 YPEL2 PRR11 GDPD1 TRIM37 APPBP2 USP32 C17orf64 CA4 HEATR6
Non-coding Genes +/-0.5Mb of Region SPDYE22P SNRPGP17 RP11-567L7.5 MIR4729 MIR454 Y_RNA RP11-567L7.3 Metazoa_SRP AC100832.1 RN7SL716P RNU2-58P RP11-579O24.3 AC099850.1 CTD-2510F5.4 MIR301A TBC1D3P1 CTD-2319I12.3 CTD-2319I12.5 RP11-3K24.1 RPL12P38 MIR4737 SCARNA20 AC005702.1 CTD-2319I12.4 AC104763.1 RP11-3K24.2 WFDC21P RP11-178C3.7 RP11-178C3.8 RP11-178C3.6 CTD-2319I12.9 FAM106DP AC005702.3 AC005702.2 AC005702.4 Metazoa_SRP RP11-3K24.3 CTD-2319I12.2 CTD-2319I12.10

IBD 17q24.3

chr17:72591636-72652289

rs7210086

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
17q24.3	chr17:72591636-72652289	rs7210086 A>C	9.58e-08^C	1.06 (1.02-1.1)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7210086 A>C	IBD	017	9.58e-08^C	1.06 (1.02-1.1)^C	A
rs7210086 A>C	UC	024	1.89e-09^C	1.11 (1.06-1.16)^C	A

Genes

Protein-coding Genes SLC39A11
Non-coding Genes CTD-3010D24.3 RPL32P33 LINC00511
Protein Coding Genes +/-0.5Mb of Region SOX9
Non-coding Genes +/-0.5Mb of Region SOX9-AS1 AC007461.2 RP11-1124B17.1 RP11-57A1.1 RP11-171G2.1 RN7SKP180 AC080037.1 SCARNA24 RP11-766H1.1

IBD 17q12

chr17:34175049-34352741

rs3091316

CCL11 CCL13 CCL2

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
17q12	chr17:34175049-34352741	rs3091316 G>A	5.26e-20^C	1.12 (1.09-1.16)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs3091316 G>A	CRO	021	1.22e-26^C	1.16 (1.12-1.2)^C	G
rs3091316 G>A	IBD	017	5.26e-20^C	1.12 (1.09-1.16)^C	G

Genes

Protein-coding Genes CCL8 CCL7 CCL2 CCL11
Non-coding Genes AC005549.2 RP11-215E13.2 RP11-215E13.1 RP11-521P1.1
Protein Coding Genes +/-0.5Mb of Region ASIC2 CCL13 TMEM132E CCL1
Non-coding Genes +/-0.5Mb of Region RP11-118G23.1 RP11-17M24.2 RP11-1086I4.2 AC005549.1 CTC-304I17.4 RNA5SP438 CTC-304I17.3 CTC-304I17.2 RP11-118G23.2 CTC-304I17.5 AC024610.1 RP11-17M24.1 TLK2P1 CTC-304I17.1 C17orf102 AC011193.1 RP11-212E8.1 RP11-28A22.2 RP11-642M2.1

IBD 18p11.21

chr18:12738414-12925254

rs1893217

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
18p11.21	chr18:12738414-12925254	rs1893217 A>G	3.05e-26^C	1.17 (1.13-1.22)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1893217	UC	024	2.04e-09	1.15	G
rs1893217	CEL	009	9.77e-09	1.15	G
rs1893217 A>G	T1D	001	1.63e-08^D	1.20^D	G
rs1893217 A>G	IBD	017	3.05e-26^C	1.17 (1.13-1.22)^C	G
rs1893217 A>G	T1D	025	1.20e-15^D	1.21^D	G
rs1893217 A>G	CRO	011	1.29e-14^D	1.25 (1.18-1.32)^D	G
rs1893217 A>G	T1D	004	3.60e-15^D
rs1893217 A>G	CRO	021	3.05e-25^C	1.18 (1.13-1.24)^C	G
rs1893217 A>G	CEL	038	2.52e-10^C	1.17 (1.12-1.23)^C	G

Genes

Protein-coding Genes PTPN2
Non-coding Genes RP11-973H7.5 STK25P1 Y_RNA RP11-973H7.1 EIF4A2P1 RP11-973H7.4
Protein Coding Genes +/-0.5Mb of Region AFG3L2 PSMG2 SPIRE1 CEP76 TUBB6 PRELID3A CIDEA CEP192 LDLRAD4 SEH1L
Non-coding Genes +/-0.5Mb of Region RP11-973H7.3 RP11-64C12.8 RP11-861E21.1 RP11-64C12.9 RP11-861E21.2 RP11-64C12.1 RNU6-170P RNU7-129P RP11-861E21.3 RP11-807E13.3 RP11-794M8.1 RP11-756J15.2 AP001198.1 C18orf15 RP11-691H4.3 RP11-773H22.4 RP11-807E13.2 RP11-756J15.3 LDLRAD4-AS1 RP11-794M8.2

IBD 18q22.2

chr18:69831437-69902924

rs727088

CD226

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
18q22.2	chr18:69831437-69902924	rs727088 A>G	4.65e-09^C	1.08 (1.05-1.11)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs727088	T1D	025	3.81e-11	1.13	G
rs727088 A>G	UC	024	1.93e-08^C	1.10 (1.06-1.14)^C	G
rs727088 A>G	IBD	017	4.65e-09^C	1.08 (1.05-1.11)^C	G

Genes

Protein-coding Genes DOK6 CD226
Non-coding Genes
Protein Coding Genes +/-0.5Mb of Region RTTN SOCS6
Non-coding Genes +/-0.5Mb of Region RP11-17E3.1 RP11-543H23.2 RP11-465I4.3 RP11-543H23.1 RP11-465I4.2 RP11-41O4.1 RP11-484N16.1 RP11-41O4.2

IBD 18q21.1

chr18:48827214-48922435

rs7240004

SMAD7

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
18q21.1	chr18:48827214-48922435	rs7240004 A>G	9.81e-09^C	1.05 (1.02-1.09)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7240004	UC		2.50e-10	1.09	A
rs7240004 A>G	IBD	017	9.81e-09^C	1.05 (1.02-1.09)^C	A
rs7240004 A>G	UC	024	1.31e-09^C	1.09 (1.05-1.12)^C	A

Genes

Protein-coding Genes SMAD7 CTIF
Non-coding Genes RP11-484L8.1
Protein Coding Genes +/-0.5Mb of Region ZBTB7C DYM
Non-coding Genes +/-0.5Mb of Region RP11-23B5.2 RP11-426J5.1 RP11-426J5.2 POLR3GP2 RP11-426J5.3 AC048380.1 RP11-46D1.2 RNA5SP456 RP11-15F12.6 RP11-15F12.1 AC016866.1 RP11-30L3.2 RP11-15F12.3 MIR4744 RP11-1058N17.1

IBD 19q13.32

chr19:46304332-46410492

rs4802307

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
19q13.32	chr19:46304332-46410492	rs4802307 G>T	7.11e-07^C	1.06 (1.03-1.1)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4802307 G>T	CRO	021	2.00e-10^C	1.1 (1.06-1.14)^C	G
rs4802307 G>T	IBD	017	7.11e-07^C	1.06 (1.03-1.1)^C	G

Genes

Protein-coding Genes PPP5C CCDC8 HIF3A
Non-coding Genes AC007193.10 RNU6-924P AC007193.9 AC007193.8
Protein Coding Genes +/-0.5Mb of Region IGFL1 NANOS2 FOXA3 NOVA2 PGLYRP1 SYMPK IGFL3 RSPH6A IRF2BP1 MYPOP IGFL2 CCDC61 IGFL4 PNMAL2 GNG8 PNMAL1 PPP5D1 AC008622.1 CALM3 PTGIR PRKD2 AP2S1 FKRP STRN4 DACT3 SLC1A5
Non-coding Genes +/-0.5Mb of Region CTC-344H19.6 CTC-344H19.4 TGIF1P1 AC006262.11 MIR769 DKFZp434J0226 AC007193.6 AC006262.5 IGFL1P1 AC006262.10 AC092301.3 RPL12P41 IGFL1P2 AC008623.1 AC006262.4 LLNLF-187D8.1 CTB-158D10.3 LLNLR-276E7.1 CTB-147N14.4 GAPDHP38 CTB-174O21.2 CTB-147N14.6 DACT3-AS1 CTB-147N14.7 CTB-12A17.3 RN7SL364P AC011551.3 MIR320E CTB-12A17.2 HNRNPMP2 Y_RNA

IBD 19q13.33

chr19:48592641-48763133

rs516246

DBP SPHK2 FUT2 IZUMO1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
19q13.33	chr19:48592641-48763133	rs516246 C>T	4.33e-09^C	1.07 (1.04-1.10)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs516246	T1D	025	5.22e-14	1.15	T
rs516246 C>T	CRO	021	1.00e-15^C	1.11 (1.07-1.14)^C	T
rs516246 C>T	IBD	017	4.33e-09^C	1.07 (1.04-1.10)^C	T

Genes

Protein-coding Genes IZUMO1 MAMSTR FGF21 NTN5 RPL18 CA11 FUT1 SULT2B1 RASIP1 FAM83E SPHK2 DBP FUT2 SPACA4
Non-coding Genes SEC1P AC022154.7
Protein Coding Genes +/-0.5Mb of Region ZNF114 SYNGR4 CCDC114 KDELR1 LMTK3 GRWD1 TMEM143 LIG1 PLA2G4C GRIN2D CTC-273B12.7 CYTH2 CARD8 KCNJ14 EMP3 C19orf68 C19orf73 RUVBL2 DHDH PPP1R15A PPFIA3 GYS1 TULP2 LHB CGB7 CTB-60B18.6 SNRNP70 BCAT2 HRC CGB5 CGB2 NTF4 LIN7B PLEKHA4 HSD17B14 KCNA7 FTL CGB CGB1 CGB8 NUCB1 BAX TRPM4
Non-coding Genes +/-0.5Mb of Region CTC-241F20.4 CARD8-AS1 CTC-453G23.5 CTC-453G23.4 CTC-453G23.7 CTC-273B12.5 CTC-273B12.10 CTC-453G23.8 CTD-2639E6.9 NTF6A NTF6B CTB-60B18.17 CTB-60B18.18 SLC6A21P RN7SL708P NUCB1-AS1 NTF6G CTB-60B18.15 CTB-60B18.10 RNU6-317P CTD-2639E6.4 CTB-60B18.12 MIR6798 AC026803.1

IBD 19q13.11

chr19:33219244-33272215

rs17694108

CEBPG

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
19q13.11	chr19:33219244-33272215	rs17694108 G>A	5.85e-15^C	1.10 (1.07-1.14)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs17694108	UC		6.17e-12	1.10	A
rs17694108	IBD	017	2.88e-09	1.10	A
rs17694108 G>A	UC	024	8.16e-13^C	1.11 (1.07-1.15)^C	A
rs17694108 G>A	CRO	021	4.09e-09^C	1.09 (1.05-1.13)^C	A

Genes

Protein-coding Genes SLC7A10
Non-coding Genes CTD-2540B15.6
Protein Coding Genes +/-0.5Mb of Region WDR88 TDRD12 GPATCH1 CEP89 RHPN2 SLC7A9 LRP3 FAAP24 CEBPA PEPD CHST8 CEBPG
Non-coding Genes +/-0.5Mb of Region CTD-2538C1.3 CTD-2085J24.3 AC008521.1 CTD-2540B15.10 CTD-2540B15.13 CTD-2085J24.5 RPL31P60 CTC-461H2.2 CTC-461H2.3 RN7SKP22 AKR1B1P7 CTD-2329C7.2 CTD-2540B15.11 CTD-2540B15.7 RPL21P131 CEBPA-AS1 CTD-2540B15.9 RPS3AP50 CTD-2540B15.12

IBD 19p13.3

chr19:1090804-1183852

rs2024092

HMHA1 GPX4

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
19p13.3	chr19:1090804-1183852	rs2024092 G>A	1.23e-15^C	1.10 (1.06-1.14)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2024092	CRO		7.12e-25	1.16	A
rs2024092 G>A	IBD	017	1.23e-15^C	1.10 (1.06-1.14)^C	A
rs2024092 G>A	CRO	021	8.26e-22^C	1.16 (1.11-1.20)^C	A

Genes

Protein-coding Genes STK11 SBNO2 GPX4 POLR2E
Non-coding Genes
Protein Coding Genes +/-0.5Mb of Region PRTN3 TMEM259 WDR18 ARID3A MISP CFD ABCA7 FSTL3 PRSS57 PLPPR3 CNN2 KISS1R AZU1 ELANE PTBP1 PALM R3HDM4 POLRMT FGF22 RNF126 MED16 GRIN3B HCN2 HMHA1 TCF3 MEX3D AC005943.2 NDUFS7 C19orf24 DAZAP1 C19orf25 ADAMTSL5 ATP5D CBARP MUM1 MBD3 EFNA2 UQCR11 REEP6 PCSK4 APC2 GAMT PLK5 MIDN CIRBP RPS15
Non-coding Genes +/-0.5Mb of Region AC006273.5 MIR3187 RNU6-2 AC004449.6 RNU6-9 AC005391.2 LLNLR-284B4.2 AC011558.5 MIR4745 RPS2P52 AC006273.4 LLNLR-260G6.1 AC005559.3 AC004156.3 LLNLR-284B4.1 AC005329.7 CTB-25B13.5 RNU6-1223P RPS15P9 AC005330.2 AC004623.3 LLNLR-307A6.1 RN7SL477P AC004221.2 HMGB2P1 CIRBP-AS1 CTB-25B13.12 AC027307.2 AC027307.1 AC005943.6 AC004623.2 CTB-25B13.9

IBD 19q13.32

chr19:46546671-46648121

rs1126510

CALM3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
19q13.32	chr19:46546671-46648121	rs1126510 A>G	1.59e-06^C	1.04 (1.01-1.07)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1126510 A>G	IBD	017	1.59e-06^C	1.04 (1.01-1.07)^C	G
rs1126510 T>G	UC	024	1.18e-08^C	1.08 (1.04-1.11)^C	G

Genes

Protein-coding Genes GNG8 PPP5D1 CALM3 PTGIR DACT3
Non-coding Genes GAPDHP38 CTB-12A17.3 AC011551.3 CTB-12A17.2
Protein Coding Genes +/-0.5Mb of Region IGFL1 PNMAL2 PNMAL1 PPP5C IGFL3 CCDC8 IGFL2 IGFL4 HIF3A AC008622.1 TMEM160 PRKD2 ZC3H4 AP2S1 FKRP STRN4 NPAS1 ARHGAP35 SAE1 SLC1A5
Non-coding Genes +/-0.5Mb of Region CTC-344H19.6 LLNLF-187D8.1 CTB-158D10.3 AC007193.10 RNU6-924P TGIF1P1 AC006262.11 LLNLR-276E7.1 DKFZp434J0226 AC007193.9 AC007193.6 AC006262.5 IGFL1P1 AC006262.10 RPL12P41 IGFL1P2 AC006262.4 AC007193.8 CTB-147N14.4 CTD-2233K9.1 CTB-174O21.2 CTB-147N14.6 DACT3-AS1 CTB-147N14.7 RN7SL364P MIR320E HNRNPMP2 Y_RNA

IBD 19p13.2

chr19:10292692-10520699

rs11879191

ICAM1 TYK2 PPAN-P2RY11

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
19p13.2	chr19:10292692-10520699	rs11879191 G>A	2.04e-18^C	1.14 (1.1-1.18)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11879191 G>A	CRO	021	1.78e-17^C	1.15 (1.1-1.19)^C	G
rs11879191 G>A	IBD	017	2.04e-18^C	1.14 (1.1-1.18)^C	G
rs11879191 G>A	UC	024	4.50e-08^C	1.12 (1.08-1.18)^C	G

Genes

Protein-coding Genes PDE4A FDX1L TYK2 CTD-2369P2.12 S1PR5 ICAM5 RAVER1 CTD-2369P2.10 CDC37 ZGLP1 ICAM3 KEAP1
Non-coding Genes AC114271.2 CTC-429L19.3 MIR1181
Protein Coding Genes +/-0.5Mb of Region PPAN ICAM1 ICAM4 ZNF846 PIN1 EIF3G PPAN-P2RY11 S1PR2 DNMT1 C19orf66 FBXL12 OLFM2 UBL5 P2RY11 COL5A3 ANGPTL6 MRPL4 RDH8 SMARCA4 ATG4D AP1M2 TMED1 DNM2 C19orf52 C19orf38 CDKN2D ILF3 SLC44A2 QTRT1 CARM1 YIPF2 KRI1
Non-coding Genes +/-0.5Mb of Region CTD-2240E14.4 C3P1 MIR4322 CTD-2369P2.8 RPL10P15 AC020931.1 CTD-2369P2.4 SNORD105B CTD-2369P2.5 CTD-2623N2.5 SNORD105 SNORA70 CTD-2553C6.1 CTD-2623N2.11 MIR5589 MIR1238 RN7SL192P MIR6793 MIR199A1 RNU7-140P ILF3-AS1 MIR4748 CTC-539A10.7 MIR638 AC007229.3 CTC-215O4.4

IBD 19q13.42

chr19:54783517-54916142

rs11672983

LILRB4 NLRP2 NLRP7 KIR2DL1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
19q13.42	chr19:54783517-54916142	rs11672983 G>A	2.48e-09^C	1.09 (1.06-1.12)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs11672983 G>A	IBD	017	2.48e-09^C	1.09 (1.06-1.12)^C	A
rs11672983 G>A	UC	024	6.50e-11^C	1.10 (1.06-1.14)^C	A

Genes

Protein-coding Genes KIR2DL4 KIR2DL1 FCAR KIR3DL1 KIR3DL2 NCR1
Non-coding Genes CTB-61M7.1 RNU6-222P KIR3DP1 KIR2DS4 CTB-61M7.2
Protein Coding Genes +/-0.5Mb of Region KIR3DX1 CDC42EP5 KIR3DL3 LILRA1 LILRB1 LILRA2 LAIR1 LILRA4 KIR2DL3 LILRB4 LILRA5 TTYH1 LENG8 LENG9 LAIR2 GP6 PPP1R12C RDH13 UBE2S DNAAF3 FAM71E2 CTD-2587H24.4 BRSK1 KMT5C SYT5 TNNI3 NLRP2 CTD-2105E13.6 HSPBP1 NLRP7 TMEM86B TMEM238 TMEM150B TMEM190 RPL28 PTPRH EPS8L1 IL11 TNNT1 COX6B2 PPP6R1
Non-coding Genes +/-0.5Mb of Region AC010518.2 AC008984.6 CTD-2587H19.3 AC008746.12 AC009892.5 AC245036.1 AC245036.2 AC010518.3 AC008984.7 AC008746.10 AC008746.5 AC009892.10 AC245036.3 VN1R105P AC009892.9 LENG8-AS1 VN1R104P AC008746.3 AC008746.9 CTB-83J4.2 AC245036.6 LILRP1 LILRP2 AC008984.5 CTD-2587H19.2 AC009892.2 AC245036.5 KIR2DP1 MIR8061 AC008984.2 AC245036.4 AC011515.2 AC098784.1 CTC-550B14.7 CTD-2587H24.10 CTD-2587H24.14 AC020922.1 CTD-2105E13.16 MIR6804 MIR6805 CTC-550B14.6 CTD-2587H24.5 CTC-550B14.10 Metazoa_SRP MIR6802 MIR6803 CTC-550B14.1 CTD-2587H24.1 snoU13 CTD-2105E13.14 CTD-2105E13.15 MIR7975

IBD 20q13.32

chr20:59153293-59295301

rs259964

ZNF831 CTSZ

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
20q13.32	chr20:59153293-59295301	rs259964 G>A	1.01e-12^C	1.09 (1.05-1.12)^C	A	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs259964	CRO		2.08e-09	1.07	A
rs259964	CRO	021	1.68e-08	1.10	A
rs259964 G>A	UC	024	6.55e-07^C	1.07 (1.03-1.11)^C	A
rs259964 G>A	IBD	017	1.01e-12^C	1.09 (1.05-1.12)^C	A

Genes

Protein-coding Genes ZNF831
Non-coding Genes
Protein Coding Genes +/-0.5Mb of Region PRELID3B STX16-NPEPL1 STX16 ATP5E NELFCD NPEPL1 GNAS TUBB1 CTSZ PHACTR3 EDN3
Non-coding Genes +/-0.5Mb of Region GNAS-AS1_2 RP3-492J12.2 RP11-261P9.4 GNAS-AS1_5 GNAS-AS1_1 RP1-309F20.3 MRPS16P2 GNAS-AS1 PIEZO1P2 RP4-806M20.4 RP4-806M20.3 RP1-309F20.4 MIR298 RP4-806M20.5 GNAS-AS1_4 MIR296 AL035250.1 RP4-614C15.2 RP11-164D18.2 RP4-719C8.1 RP4-614C15.3 PIEZO1P1

IBD 20q13.12

chr20:44430797-44508282

rs6017342

ADA HNF4A

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
20q13.12	chr20:44430797-44508282	rs6017342 C>A	1.43e-21^C	1.11 (1.09-1.15)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6017342	UC	024	1.01e-29	1.23	C
rs6017342	IBD	017	1.83e-13	1.12	C
rs6017342 C>A	UC	029	1.09e-20^D	1.2 (1.15-1.27)^D	C

Genes

Protein-coding Genes LINC01620 HNF4A TTPAL SERINC3
Non-coding Genes LINC01430 RPL37AP1
Protein Coding Genes +/-0.5Mb of Region OSER1 FITM2 TOX2 GDAP1L1 JPH2 R3HDML KCNK15 RIMS4 WISP2 STK4 ADA TOMM34 PABPC1L PKIG YWHAB
Non-coding Genes +/-0.5Mb of Region MIR3646 AL132772.1 Y_RNA RN7SL443P RP5-881L22.5 RP5-881L22.6 HNF4A-AS1 OSER1-AS1 LINC01260 KCNK15-AS1 RP4-781B1.5 PGBD4P2 STK4-AS1 Y_RNA

IBD 20q11.22

chr20:34322913-35581362

rs6088765

CEP250 UQCC1 PROCR

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
20q11.22	chr20:34322913-35581362	rs6088765 T>G	9.85e-06^C	1.05 (1.02-1.09)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6088765 T>G	UC	024	2.21e-08^C	1.08 (1.04-1.12)^C	G
rs6088765 T>G	IBD	017	9.85e-06^C	1.05 (1.02-1.09)^C	G

Genes

Protein-coding Genes PIGU GGT7 ACSS2 NCOA6 C20orf173 GSS MMP24-AS1 GDF5 UQCC1 PROCR GDF5OS EIF6 RP4-614O4.11 EDEM2 DYNLRB1 ERGIC3 FAM83C MYH7B TP53INP2 TRPC4AP ITCH MMP24 CEP250 MAP1LC3A
Non-coding Genes CTD-3216D2.4 AL118520.1 FDX1P1 RNU6-407P RP3-477O4.5 RP3-468O1.6 RP11-346K17.3 MT1P3 RP3-477O4.14 SNORD56 MIR644A RP4-614O4.13 RNA5SP483 Y_RNA MIR499A CDC42P1 ITCH-AS1 HMGB3P1 AL121753.1 ITCH-IT1 RP11-42O4.2 RPL36P4 MIR1289-1 FER1L4 Y_RNA FAM83C-AS1
Protein Coding Genes +/-0.5Mb of Region EIF2S2 AHCY ASIP RALY CHMP4B SCAND1 PHF20 NFS1 CPNE1 ROMO1 RBM12 CNBD2 RP1-309K20.6 RBM39 SPAG4
Non-coding Genes +/-0.5Mb of Region TPM3P2 PIGPP3 MIR4755 RPS2P1 RP4-785G19.2 RP5-1125A11.6 RALY-AS1 RP5-1125A11.7 RP5-1125A11.4 XPOTP1 RP4-785G19.5 CTD-3216D2.5 RN7SKP271 LINC00657 RPL37P1 RP4-550H1.7 RP4-550H1.4 RNU6-937P RPF2P1 RNU4-40P Y_RNA HIGD1AP16 HMGB3P2 RNU6-759P COX7BP2

IBD 20q13.13

chr20:50301749-50423945

rs913678

CEBPB

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
20q13.13	chr20:50301749-50423945	rs913678 T>C	4.59e-08^C	1.05 (1.02-1.09)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs913678 T>C	UC	024	3.59e-07^C	1.06 (1.03-1.11)^C	T
rs913678 T>C	IBD	017	4.59e-08^C	1.05 (1.02-1.09)^C	T

Genes

Protein-coding Genes
Non-coding Genes LINC01271 LINC01270
Protein Coding Genes +/-0.5Mb of Region TMEM189-UBE2V1 TMEM189 UBE2V1 RNF114 CEBPB SLC9A8 SNAI1 SPATA2 PTPN1 FAM65C ADNP PARD6B BCAS4
Non-coding Genes +/-0.5Mb of Region RP11-112L6.2 LINC01272 CEBPB-AS1 RP5-1041C10.3 RP11-112L6.3 KRT18P4 Y_RNA LINC01273 RNU6-147P Metazoa_SRP TRERNA1 AL133228.1 RP4-530I15.6 Y_RNA MIR1302-5 RPL36P2 AL133230.1 RN7SL672P RP4-530I15.9 TMSB4XP6 PSMD10P1 MIR645 COX6CP2 RN7SL636P

IBD 20q11.21

chr20:32611779-33001967

rs4911259

DNMT3B

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
20q11.21	chr20:32611779-33001967	rs4911259 T>G	1.20e-09^C	1.08 (1.04-1.11)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs4911259 T>G	IBD	017	1.20e-09^C	1.08 (1.04-1.11)^C	G
rs4911259 T>G	UC	024	2.15e-07^C	1.07 (1.03-1.11)^C	G
rs4911259 T>G	CRO	021	5.12e-06^C	1.08 (1.04-1.11)^C	G

Genes

Protein-coding Genes COMMD7 SUN5 DNMT3B MAPRE1 EFCAB8
Non-coding Genes C20orf203 RP5-1085F17.4 RP5-1085F17.3 BAK1P1
Protein Coding Genes +/-0.5Mb of Region KIF3B PLAGL2 TM9SF4 ASXL1 NOL4L POFUT1 SNTA1 BPIFA3 BPIFA1 BPIFB2 BPIFB4 CBFA2T2 BPIFB6 BPIFA2 BPIFB1 BPIFB3 CDK5RAP1
Non-coding Genes +/-0.5Mb of Region RP11-410N8.1 AL121897.1 AL049539.1 RP11-410N8.4 MIR1825 RP5-1184F4.7 RSL24D1P6 RP5-1184F4.5 RP5-836N17.4 RP11-358N2.2 TSPY26P RP11-410N8.3 BPIFB5P SOCS2P1 RP11-49G10.3 RPL12P3 PUDPP3 AL121756.1 BPIFB9P BPIFA4P

IBD 20q13.12

chr20:45906223-46158839

rs1569723

PLTP CD40 MMP9

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
20q13.12	chr20:45906223-46158839	rs1569723 A>C	6.55e-11^C	1.09 (1.06-1.13)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs1569723 A>C	CRO	021	9.95e-14^C	1.13 (1.09-1.18)^C	C
rs1569723 A>C	IBD	017	6.55e-11^C	1.09 (1.06-1.13)^C	C

Genes

Protein-coding Genes MMP9 CD40 ZNF335 PCIF1 SLC12A5 NCOA5 PLTP
Non-coding Genes RP11-465L10.10 RPL13P2 FTLP1
Protein Coding Genes +/-0.5Mb of Region WFDC11 NEURL2 WFDC13 WFDC10A DNTTIP1 WFDC6 ZSWIM3 SPINT3 EPPIN WFDC10B DBNDD2 PIGT SNX21 UBE2C WFDC3 ACOT8 SPATA25 SYS1-DBNDD2 SPINT4 EPPIN-WFDC6 TNNC2 TP53TG5 ZSWIM1 CTSA WFDC2 WFDC8 WFDC9 CDH22 ZNF334 SLC35C2 ELMO2 OCSTAMP SLC13A3
Non-coding Genes +/-0.5Mb of Region HSPD1P21 CCNB1IP1P2 RPS2P7 HNRNPA1P3 RNU6ATAC38P RPL5P2 SPINT5P RNA5SP485 RP3-461P17.9 MIR3617 RP3-453C12.15 RP3-461P17.10 RP3-461P17.6 Metazoa_SRP RP3-337O18.9 MIR6812 ZNF840P RP11-394O2.3 RP5-981L23.2 RP5-998H6.2 ZNF663P

IBD 20q13.33

chr20:63567747-63814828

rs6062504

TNFRSF6B ZGPAT LIME1 SLC2A4RG

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
20q13.33	chr20:63567747-63814828	rs6062504 G>A	1.09e-23^C	1.1 (1.08-1.14)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6062504	UC		1.19e-08	1.08	G
rs6062504	IBD	017	2.65e-10	1.10	G
rs6062504	CRO	021	8.07e-11	1.12	G
rs6062504 G>A	UC	024	7.49e-11^C	1.08 (1.04-1.12)^C	G

Genes

Protein-coding Genes TNFRSF6B ZGPAT RTEL1 ZBTB46 RP4-583P15.15 LIME1 RTEL1-TNFRSF6B ARFRP1 RP4-583P15.14 SLC2A4RG HELZ2 GMEB2 STMN3
Non-coding Genes ZBTB46-AS1 CTD-3184A7.4 RP4-583P15.10 RP4-583P15.16
Protein Coding Genes +/-0.5Mb of Region NKAIN4 KCNQ2 SRMS CHRNA4 YTHDF1 ARFGAP1 PTK6 C20orf195 EEF1A2 COL20A1 PPDPF BIRC7 TCEA2 PCMTD2 ABHD16B NPBWR2 DNAJC5 OPRL1 SAMD10 RGS19 ZNF512B UCKL1 TPD52L2 MYT1 PRPF6 SOX18 LKAAEAR1
Non-coding Genes +/-0.5Mb of Region RP4-697K14.3 HAR1B RP11-305P22.9 RP4-697K14.15 HAR1A RP5-963E22.6 HAR1A RP11-358D14.3 FLJ16779 RP11-261N11.8 MIR3196 RNU6-994P RP5-963E22.5 RP5-963E22.4 RP11-358D14.2 MIR4326 MIR124-3 RNU1-134P AL118506.1 LINC00176 MIR941-3 AL118506.2 RP11-476I15.5 RP4-591C20.9 MIR647 LINC00266-1 MIR941-5 MIR1914 MIR6813 C20orf181 MIR941-1 UCKL1-AS1 RP13-152O15.5 CICP4 MIR941-4

IBD 20q11.21

chr20:31995378-32517173

rs6142618

HCK

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
20q11.21	chr20:31995378-32517173	rs6142618 G>A	6.05e-10^C	1.08 (1.04-1.1)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs6142618 G>A	IBD	017	6.05e-10^C	1.08 (1.04-1.1)^C	G
rs6142618 G>A	CRO	021	2.30e-09^C	1.09 (1.05-1.12)^C	G

Genes

Protein-coding Genes XKR7 KIF3B PLAGL2 TM9SF4 HCK ASXL1 NOL4L CCM2L POFUT1
Non-coding Genes AL121897.1 AL049539.1 MIR1825 RP5-1184F4.7 RSL24D1P6 RP5-1184F4.5 RP5-836N17.4 RNA5SP481 RP11-358N2.2 TSPY26P RP1-310O13.7 RNA5SP482
Protein Coding Genes +/-0.5Mb of Region HM13 ID1 TPX2 COX4I2 BCL2L1 PDRG1 DUSP15 TTLL9 FOXS1 MYLK2 COMMD7 BPIFB2 SUN5 DNMT3B MAPRE1 EFCAB8
Non-coding Genes +/-0.5Mb of Region RP3-324O17.8 RNU1-94P RP3-324O17.7 RP11-243J16.7 RP1-310O13.13 MIR3193 RNU6-384P ABALON MCTS2P HM13-IT1 RP11-243J16.8 HM13-AS1 RP11-410N8.1 RP11-410N8.4 C20orf203 RP5-1085F17.4 RP5-1085F17.3 BAK1P1 RP11-410N8.3

IBD 21q22.11

chr21:33370311-33842379

rs2284553

GART IFNAR1 IFNAR2 IL10RB TMEM50B IFNGR2

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
21q22.11	chr21:33370311-33842379	rs2284553 G>A	1.53e-08^C	1.08 (1.04-1.1)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2284553 G>A	IBD	017	1.53e-08^C	1.08 (1.04-1.1)^C	G
rs2284553 G>A	CRO	021	2.14e-16^C	1.12 (1.09-1.16)^C	G

Genes

Protein-coding Genes SON DNAJC28 DONSON GART IFNGR2 TMEM50B CRYZL1 AP000304.12 ITSN1
Non-coding Genes RPS5P3 BTF3P6 AP000302.58 MIR6501
Protein Coding Genes +/-0.5Mb of Region IFNAR1 OLIG2 IL10RB OLIG1 IFNAR2 AP000295.9 ATP5O SLC5A3 MRPS6
Non-coding Genes +/-0.5Mb of Region AP000290.1 AP000289.6 C21orf62-AS1 AP000282.2 AP000295.10 USF1P1 AP000282.3 AP000290.7 IL10RB-AS1 LINC00945 LINC01548 RN7SL740P LINC00649 LINC00310 AP000569.9 AP000320.7 RPS5P2 AP000318.2

IBD 21q22.2

chr21:39081110-39111851

rs2836878

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
21q22.2	chr21:39081110-39111851	rs2836878 G>A	7.27e-43^C	1.18 (1.14-1.22)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2836878	UC	024	4.59e-30	1.27	G
rs2836878	AS	026	4.72e-16	1.04	C
rs2836878	UC		7.35e-53	1.25	G
rs2836878	CRO	021	1.74e-09	1.12	G
rs2836878 G>A	UC	029	1.86e-22^D	1.25 (1.2-1.32)^D	G
rs2836878 G>A	IBD	017	7.27e-43^C	1.18 (1.14-1.22)^C	G

Genes

Protein-coding Genes
Non-coding Genes
Protein Coding Genes +/-0.5Mb of Region ERG ETS2 HMGN1 BRWD1 SH3BGR PSMG1 B3GALT5 LCA5L WRB
Non-coding Genes +/-0.5Mb of Region AF064858.11 AP001042.1 AF064858.6 SNORA62 AF064858.8 AF064858.10 RPSAP64 LINC00114 AF064858.7 AP001043.1 TIMM9P2 BRWD1-AS2 RPL23AP12 PCBP2P1 RNF6P1 RPS26P4 AF121897.4 MIR6508 Y_RNA METTL21AP1 MYL6P2 uc_338 BRWD1-IT1 B3GALT5-AS1 AF129408.17 BRWD1-AS1

IBD 21q21.1

chr21:15326120-15470979

rs2823286

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
21q21.1	chr21:15326120-15470979	rs2823286 G>A	9.28e-30^C	1.16 (1.12-1.19)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2823286 G>A	UC	024	5.95e-14^C	1.12 (1.08-1.16)^C	G
rs2823286 G>A	CRO	021	4.63e-28^C	1.18 (1.14-1.23)^C	G
rs2823286 G>A	IBD	017	9.28e-30^C	1.16 (1.12-1.19)^C	G

Genes

Protein-coding Genes
Non-coding Genes AJ006998.2 AF246928.1
Protein Coding Genes +/-0.5Mb of Region NRIP1 USP25
Non-coding Genes +/-0.5Mb of Region AF127577.10 AF127936.9 AF127577.11 AF127936.7 AF127577.8 RBMX2P1 AF127577.13 AF127577.12 RBPMSLP RAD23BLP RNU6-1326P CYCSP42 AL034449.1 AJ009632.3

IBD 21q22.3

chr21:44152485-44266077

rs7282490

ICOSLG CH507-9B2.1

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
21q22.3	chr21:44152485-44266077	rs7282490 A>G	2.35e-26^C	1.11 (1.07-1.14)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs7282490	UC		2.06e-16	1.11	G
rs7282490	IBD	017	6.11e-11	1.10	G
rs7282490	CRO	021	1.10e-08	1.11	G
rs7282490 A>G	UC	024	1.77e-16^C	1.10 (1.06-1.14)^C	G
rs7282490 A>G	AS	026	6.20e-09^C	1.11^C	G

Genes

Protein-coding Genes ICOSLG DNMT3L
Non-coding Genes AP001059.5 AP001056.1 AP001057.1 AP001058.3 AP001055.6 AP001059.7 AP001059.6
Protein Coding Genes +/-0.5Mb of Region CSTB RRP1B PWP2 PDXK RRP1 HSF2BP TRAPPC10 AGPAT3 C21orf33 KRTAP12-3 KRTAP12-1 KRTAP12-2 PFKL C21orf2 TSPEAR KRTAP10-12 KRTAP10-10 LRRC3 AIRE KRTAP12-4 KRTAP10-2 KRTAP10-8 KRTAP10-11 KRTAP10-5 KRTAP10-6 KRTAP10-4 KRTAP10-3 TRPM2 KRTAP10-1 KRTAP10-7 KRTAP10-9
Non-coding Genes +/-0.5Mb of Region AATBC RNU6-859P H2AFZP1 AP001052.1 TMEM97P1 MYL6P1 RNU6-1150P KRTAP10-13P TSPEAR-AS1 AP001063.1 MTND5P1 KB-68A7.1 TRPM2-AS MTCYBP21 AP001062.9 AP001065.15 KB-68A7.2 RP1-225L15.1 snoZ6 snoZ6 AP001062.8 AP001062.7 MTND6P21 TSPEAR-AS2 IMMTP1 LRRC3-AS1

IBD 22q11.21

chr22:21454896-21649639

rs2266959

MAPK1 RIMBP3 YDJC UBE2L3 CCDC116

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
22q11.21	chr22:21454896-21649639	rs2266959 G>T	1.39e-16^C	1.11 (1.07-1.15)^C	T	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2266959 G>T	UC	024	4.65e-07^C	1.08 (1.03-1.13)^C	T
rs2266959 G>T	IBD	017	1.39e-16^C	1.11 (1.07-1.15)^C	T
rs2266959 C>A	JIA	023	6.20e-09^D	1.24 (1.15-1.33)^D	A
rs2266959 G>T	CRO	021	3.89e-16^C	1.13 (1.08-1.17)^C	T

Genes

Protein-coding Genes RIMBP3C SDF2L1 CCDC116 YDJC UBE2L3
Non-coding Genes Metazoa_SRP TMEM191C Metazoa_SRP KB-1440D3.14 PI4KAP2 Metazoa_SRP SCARNA17 RN7SKP221
Protein Coding Genes +/-0.5Mb of Region SLC7A4 GGT2 POM121L7 LZTR1 HIC2 THAP7 RIMBP3B AIFM3 LRRC74B P2RX6 YPEL1 PPM1F PPIL2 MAPK1 TOP3B
Non-coding Genes +/-0.5Mb of Region P2RX6P TUBA3GP POM121L8P KB-1183D5.16 Metazoa_SRP FAM230B TUBA3FP XXbac-B135H6.18 E2F6P2 KB-1183D5.13 KB-1183D5.18 Metazoa_SRP MIR649 KB-1592A4.14 KB-1183D5.14 RN7SKP63 THAP7-AS1 KB-1592A4.15 E2F6P3 BCRP6 SCARNA17 AC002472.11 BCRP2 PPP1R26P5 XXbac-B135H6.15 IGLVI-70 LL22NC03-23C6.13 IGLVIV-66-1 IGLVI-63 PRAMENP IGLV4-69 LL22NC03-23C6.12 IGLVV-66 IGLV8-61 MIR130B KB-1027C11.4 IGLVI-68 IGLVIV-64 LL22NC03-88E1.17 RNA5SP493 IGLV10-67 LL22NC03-23C6.15 IGLVIV-65 IGLV1-62 LL22NC03-88E1.18 ABHD17AP5 MIR301B LL22NC03-86G7.1 KB-1440D3.13 RN7SL280P

IBD 22q13.1

chr22:39253129-39364639

rs2413583

TAB1 ATF4 APOBEC3G

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
22q13.1	chr22:39253129-39364639	rs2413583 C>T	4.40e-33^C	1.2 (1.16-1.25)^C	C	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2413583	CRO		7.72e-36	1.23	G
rs2413583	CRO	021	4.44e-22	1.25	G
rs2413583	UC	024	2.95e-09	1.16	G
rs2413583 C>T	IBD	017	4.40e-33^C	1.2 (1.16-1.25)^C	C
rs2413583 C>T	CRO	011	1.10e-26^C	1.23 (1.18-1.28)^C	C

Genes

Protein-coding Genes SYNGR1 RPL3
Non-coding Genes SNORD43 SNORD83A AL022326.1 RP3-333H23.8 SNORD83B
Protein Coding Genes +/-0.5Mb of Region APOBEC3A APOBEC3F APOBEC3D DNAL4 PDGFB NPTXR APOBEC3G CBX7 APOBEC3H APOBEC3B APOBEC3C CBX6 SUN2 MIEF1 RPS19BP1 ENTHD1 MGAT3 CACNA1I TAB1 ATF4
Non-coding Genes +/-0.5Mb of Region APOBEC3B-AS1 RP4-742C19.13 COX5BP7 CTA-150C2.13 RP4-742C19.12 CTA-150C2.20 FUNDC2P4 RP1-172B20.6 MGAT3-AS1 RP3-333H23.9

IBD 22q12.2

chr22:29651931-30271212

rs2412970

LIF OSM MTMR3

Hits

Chr Band	Position	Marker	P Value	OR (95% CI)	Risk Allele	Study
22q12.2	chr22:29651931-30271212	rs2412970 A>G	2.70e-14^C	1.08 (1.05-1.11)^C	G	017

Markers

Marker	Disease	Study	P Value	OR (95% CI)	Risk Allele
rs2412970 A>G	IBD	017	2.70e-14^C	1.08 (1.05-1.11)^C	G
rs2412970 A>G	UC	024	4.73e-07^C	1.07 (1.04-1.11)^C	G
rs2412970 A>G	CRO	021	5.94e-12^C	1.08 (1.05-1.12)^C	G

Genes

Protein-coding Genes ZMAT5 CABP7 LIF OSM ASCC2 MTMR3 UQCR10 NF2 HORMAD2
Non-coding Genes Y_RNA HORMAD2-AS1 RP1-102K2.8 MIR6818 RP1-76B20.11 CTA-85E5.7 RP3-438O4.4 AC004819.1 RP1-102K2.6 AC003681.1 RNU6-331P RP1-76B20.12 RP3-394A18.1 CTA-85E5.6 CNN2P1
Protein Coding Genes +/-0.5Mb of Region KREMEN1 EWSR1 RHBDD3 NIPSNAP1 NEFH EMID1 GAS2L1 AP1B1 RFPL1 RASL10A THOC5 SEC14L6 RP4-539M6.19 SEC14L4 PES1 GAL3ST1 SEC14L3 GATSL3 SEC14L2 RP1-130H16.18 TCN2 DUSP18 SF3A1 RNF215 OSBP2 MTFP1 TBC1D10A SLC35E4 CCDC157
Non-coding Genes +/-0.5Mb of Region AC000041.10 RNU6-1219P AC002059.10 AC000035.3 CTA-984G1.5 RFPL4AP6 RFPL1S CTA-256D12.11 SNORD125 AC000041.8 RPEP4 MIR3653 RP4-539M6.18 RP4-539M6.14 SIRPAP1 RP4-539M6.20 RP4-539M6.21 AL022336.1 RP1-102K2.9 AC004832.1 RNU6-564P SDC4P RP4-539M6.22 RP1-56J10.8 CTA-963H5.5