Overview

IDAllelesLocationGenome BuildSource
rs9828629C/Tchr3: 7148119538dbsnp146
rs9828629C/T chr3: 71530346 37dbsnp146_grch37
rs9828629T/C chr3: 71481195 38ImmunoChip
rs9828629T/C chr3: 71530346 37ImmunoChip
rs9828629T/C chr3: 71613036 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs61506415rs9828629rs9828629130

Criteria

rs9828629 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs9828629 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  FOXP1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs9828629, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.