Overview

IDAllelesLocationGenome BuildSource
rs963986G/Cchr17: 4240956138dbsnp146
rs963986G/C chr17: 40561579 37dbsnp146_grch37
imm_17_37815105G/C chr17: 42409561 38ImmunoChip
imm_17_37815105G/C chr17: 40561579 37ImmunoChip
imm_17_37815105G/C chr17: 37815105 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs56519828rs963986rs963986130
rs59361647rs963986rs963986130

Criteria

rs963986 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs963986 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  PTRF 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs963986, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.