Overview

IDAllelesLocationGenome BuildSource
rs941823T/Cchr13: 4043984038dbsnp146
rs941823T/C chr13: 41013977 37dbsnp146_grch37
rs941823T/C chr13: 40439840 38ImmunoChip
rs941823T/C chr13: 41013977 37ImmunoChip
rs941823T/C chr13: 39911977 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs56596641rs941823rs941823130
rs59372704rs941823rs941823130

Criteria

rs941823 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs941823 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  LINC00598 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs941823, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.