Overview

IDAllelesLocationGenome BuildSource
rs9388489A/Gchr6: 12637757338dbsnp146
rs9388489A/G chr6: 126698719 37dbsnp146_grch37
imm_6_126740412T/C chr6: 126377573 38ImmunoChip
imm_6_126740412T/C chr6: 126698719 37ImmunoChip
imm_6_126740412T/C chr6: 126740412 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs56619536rs9388489rs9388489130
rs17703365rs9388489rs9388489123
rs57517699rs9388489rs9388489130

Criteria

rs9388489 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs9388489 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  CENPW 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs9388489, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.