Overview

IDAllelesLocationGenome BuildSource
rs9373839T/Cchr6: 10620774238dbsnp146
rs9373839T/C chr6: 106655617 37dbsnp146_grch37
rs9373839A/G chr6: 106207742 38ImmunoChip
rs9373839A/G chr6: 106655617 37ImmunoChip
rs9373839A/G chr6: 106762310 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17441272rs9373839rs9373839123

Criteria

rs9373839 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs9373839 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  ATG5 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs9373839, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.