Overview

IDAllelesLocationGenome BuildSource
rs9282641G/Achr3: 12207792138dbsnp146
rs9282641G/A chr3: 121796768 37dbsnp146_grch37
rs9282641T/C chr3: 122077921 38ImmunoChip
rs9282641T/C chr3: 121796768 37ImmunoChip
rs9282641T/C chr3: 123279458 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs56444352rs9282641rs9282641130
rs57007985rs9282641rs9282641130
rs36226546rs9282641rs9282641127
rs11575854rs9282641rs9282641123

Criteria

rs9282641 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs9282641 as derived from dbSNP:
  • in intron
  • in 5prime utr
Gene(s) at location of variation:  CD86 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs9282641, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.