Overview

IDAllelesLocationGenome BuildSource
rs9268853T/Cchr6: 3246186638dbsnp146
rs9268853T/C chr6: 32429643 37dbsnp146_grch37

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs61720347rs9268853rs9268853130
rs114240154rs9268853rs9268853136
rs113204855rs9268853rs9268853135
rs113340578rs9268853rs9268853135
rs118024388rs114240154rs9268853132

Criteria

rs9268853 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs9268853 as derived from dbSNP:
  • in 5prime gene region

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs9268853, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.