Overview

IDAllelesLocationGenome BuildSource
rs9268645C/Gchr6: 3244075038dbsnp146
rs9268645C/G chr6: 32408527 37dbsnp146_grch37

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs57032029rs9268645rs9268645130
rs17578576rs9268645rs9268645123
rs61292846rs9268645rs9268645130
rs117324103rs115736223rs9268645132
rs115736223rs9268645rs9268645136

Criteria

rs9268645 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs9268645 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  HLA-DRA 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs9268645, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.