Overview

IDAllelesLocationGenome BuildSource
rs917116T/Gchr7: 2813312038dbsnp146
rs917116T/G chr7: 28172739 37dbsnp146_grch37
imm_7_28139264A/C chr7: 28133120 38ImmunoChip
imm_7_28139264A/C chr7: 28172739 37ImmunoChip
imm_7_28139264A/C chr7: 28139264 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs58553642rs917116rs917116130
rs10370654rs917116rs917116120
rs11486824rs917116rs917116121

Criteria

rs917116 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs917116 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  JAZF1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs917116, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.