Overview

IDAllelesLocationGenome BuildSource
rs864745T/Cchr7: 2814093738dbsnp146
rs864745T/C chr7: 28180556 37dbsnp146_grch37
imm_7_28147081A/G chr7: 28140937 38ImmunoChip
imm_7_28147081A/G chr7: 28180556 37ImmunoChip
imm_7_28147081A/G chr7: 28147081 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs56499143rs864745rs864745130
rs10380837rs864745rs864745120
rs117777628rs864745rs864745132
rs10305032rs864745rs864745120
rs56756015rs864745rs864745130
rs57976508rs864745rs864745130

Criteria

rs864745 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs864745 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  JAZF1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs864745, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.