Overview

IDAllelesLocationGenome BuildSource
rs849142T/Cchr7: 2814627238dbsnp146
rs849142T/C chr7: 28185891 37dbsnp146_grch37
imm_7_28152416A/G chr7: 28146272 38ImmunoChip
imm_7_28152416A/G chr7: 28185891 37ImmunoChip
imm_7_28152416A/G chr7: 28152416 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs117555419rs849142rs849142132
rs386617309rs849142rs849142142
rs17705115rs849142rs849142123

Criteria

rs849142 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs849142 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  JAZF1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs849142, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.