Overview

IDAllelesLocationGenome BuildSource
rs8016947T/Gchr14: 3536346038dbsnp146
rs8016947T/G chr14: 35832666 37dbsnp146_grch37
1kg_14_34902417T/G chr14: 35363460 38ImmunoChip
1kg_14_34902417T/G chr14: 35832666 37ImmunoChip
1kg_14_34902417T/G chr14: 34902417 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17513599rs8016947rs8016947123
rs61507497rs8016947rs8016947130

Criteria

rs8016947 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs8016947 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs8016947, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.