Overview

IDAllelesLocationGenome BuildSource
rs713875C/Gchr22: 3019649838dbsnp146
rs713875C/G chr22: 30592487 37dbsnp146_grch37
imm_22_28922487C/G chr22: 30196498 38ImmunoChip
imm_22_28922487C/G chr22: 30592487 37ImmunoChip
imm_22_28922487C/G chr22: 28922487 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17655011rs713875rs713875123

Criteria

rs713875 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs713875 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  HORMAD2 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs713875, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.