Overview

IDAllelesLocationGenome BuildSource
rs703842A/Gchr12: 5776895638dbsnp146
rs703842A/G chr12: 58162739 37dbsnp146_grch37
imm_12_56449006A/G chr12: 57768956 38ImmunoChip
imm_12_56449006A/G chr12: 58162739 37ImmunoChip
imm_12_56449006A/G chr12: 56449006 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs60454949rs703842rs703842130
rs116930041rs703842rs703842132
rs3168416rs703842rs703842106
rs386606843rs703842rs703842142

Criteria

rs703842 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs703842 as derived from dbSNP:
  • in 5prime gene region
  • in 3prime utr
Gene(s) at location of variation:  CYP27B1  METTL1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs703842, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.