Overview

IDAllelesLocationGenome BuildSource
rs702873C/Tchr2: 6085440738dbsnp146
rs702873C/T chr2: 61081542 37dbsnp146_grch37
imm_2_60935046T/C chr2: 60854407 38ImmunoChip
imm_2_60935046T/C chr2: 61081542 37ImmunoChip
imm_2_60935046T/C chr2: 60935046 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs59580832rs702873rs702873130
rs17538930rs702873rs702873123

Criteria

rs702873 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs702873 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  LINC01185 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs702873, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.