Overview

IDAllelesLocationGenome BuildSource
rs7020673C/Gchr9: 429174738dbsnp146
rs7020673C/G chr9: 4291747 37dbsnp146_grch37
imm_9_4281747G/C chr9: 4291747 38ImmunoChip
imm_9_4281747G/C chr9: 4291747 37ImmunoChip
imm_9_4281747G/C chr9: 4281747 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17660823rs7020673rs7020673123
rs61567654rs7020673rs7020673130

Criteria

rs7020673 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs7020673 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  GLIS3 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs7020673, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.