Overview

IDAllelesLocationGenome BuildSource
rs6738825A/Gchr2: 19803217138dbsnp146
rs6738825A/G chr2: 198896895 37dbsnp146_grch37
rs6738825T/C chr2: 198032171 38ImmunoChip
rs6738825T/C chr2: 198896895 37ImmunoChip
rs6738825T/C chr2: 198605140 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs61323253rs6738825rs6738825130

Criteria

rs6738825 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs6738825 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  PLCL1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs6738825, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.