Overview

IDAllelesLocationGenome BuildSource
rs6718520A/Gchr2: 4309843238dbsnp146
rs6718520A/G chr2: 43325570 37dbsnp146_grch37
1kg_2_43179074T/C chr2: 43098432 38ImmunoChip
1kg_2_43179074T/C chr2: 43325570 37ImmunoChip
1kg_2_43179074T/C chr2: 43179074 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs58374652rs6718520rs6718520130
rs56416136rs6718520rs6718520130

Criteria

rs6718520 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs6718520 as derived from dbSNP:
  • in intron

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs6718520, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.