Overview

IDAllelesLocationGenome BuildSource
rs602662G/Achr19: 4870372838dbsnp146
rs602662G/A chr19: 49206985 37dbsnp146_grch37
rs602662A/G chr19: 48703728 38ImmunoChip
rs602662A/G chr19: 49206985 37ImmunoChip
rs602662A/G chr19: 53898797 36ImmunoChip
imm_19_53898797T/C chr19: 48703728 38ImmunoChip
imm_19_53898797T/C chr19: 49206985 37ImmunoChip
imm_19_53898797T/C chr19: 53898797 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17297331rs602662rs602662123
rs58593496rs602662rs602662130

Criteria

rs602662 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs602662 as derived from dbSNP:
  • has reference
  • has non-synonymous missense
Gene(s) at location of variation:  FUT2 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs602662, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.