Overview

IDAllelesLocationGenome BuildSource
rs5754217G/Tchr22: 2158538638dbsnp146
rs5754217G/T chr22: 21939675 37dbsnp146_grch37
imm_22_20269675T/G chr22: 21585386 38ImmunoChip
imm_22_20269675T/G chr22: 21939675 37ImmunoChip
imm_22_20269675T/G chr22: 20269675 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs57411762rs5754217rs5754217130
rs7291229rs5754217rs5754217117

Criteria

rs5754217 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs5754217 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  UBE2L3 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs5754217, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.