Overview

IDAllelesLocationGenome BuildSource
rs5029937G/Tchr6: 13787401438dbsnp146
rs5029937G/T chr6: 138195151 37dbsnp146_grch37
imm_6_138236844A/C chr6: 137874014 38ImmunoChip
imm_6_138236844A/C chr6: 138195151 37ImmunoChip
imm_6_138236844A/C chr6: 138236844 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs57746720rs5029937rs5029937130

Criteria

rs5029937 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs5029937 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  TNFAIP3 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs5029937, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.