Overview

IDAllelesLocationGenome BuildSource
rs4917014T/Gchr7: 5026626738dbsnp146
rs4917014T/G chr7: 50305863 37dbsnp146_grch37
rs4917014T/G chr7: 50266267 38ImmunoChip
rs4917014T/G chr7: 50305863 37ImmunoChip
rs4917014T/G chr7: 50276409 36ImmunoChip
imm_7_50276409T/G chr7: 50266267 38ImmunoChip
imm_7_50276409T/G chr7: 50305863 37ImmunoChip
imm_7_50276409T/G chr7: 50276409 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs61612313rs4917014rs4917014130
rs17634255rs4917014rs4917014123
rs56648780rs4917014rs4917014130

Criteria

rs4917014 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs4917014 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs4917014, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.