Overview

IDAllelesLocationGenome BuildSource
rs4902647C/Tchr14: 6878747438dbsnp146
rs4902647C/T chr14: 69254191 37dbsnp146_grch37
imm_14_68323944A/G chr14: 68787474 38ImmunoChip
imm_14_68323944A/G chr14: 69254191 37ImmunoChip
imm_14_68323944A/G chr14: 68323944 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs59524586rs4902647rs4902647130

Criteria

rs4902647 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs4902647 as derived from dbSNP:
  • in 3prime gene region
Gene(s) at location of variation:  ZFP36L1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs4902647, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.