Overview

IDAllelesLocationGenome BuildSource
rs4772201A/Gchr13: 9943400538dbsnp146
rs4772201A/G chr13: 100086259 37dbsnp146_grch37
1kg_13_98884260A/G chr13: 99434005 38ImmunoChip
1kg_13_98884260A/G chr13: 100086259 37ImmunoChip
1kg_13_98884260A/G chr13: 98884260 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs61380262rs4772201rs4772201130

Criteria

rs4772201 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs4772201 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs4772201, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.