Overview

IDAllelesLocationGenome BuildSource
rs4272A/Gchr7: 9260751538dbsnp146
rs4272A/G chr7: 92236829 37dbsnp146_grch37
rs4272T/C chr7: 92607515 38ImmunoChip
rs4272T/C chr7: 92236829 37ImmunoChip
rs4272T/C chr7: 92074765 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs57101095rs4272rs4272130
rs3199960rs4272rs4272106
rs17760867rs4272rs4272123
rs11546334rs4272rs4272121

Criteria

rs4272 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs4272 as derived from dbSNP:
  • in 3prime utr
Gene(s) at location of variation:  CDK6 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs4272, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.