Overview

IDAllelesLocationGenome BuildSource
rs4075958G/Achr5: 17735751138dbsnp146
rs4075958G/A chr5: 176784512 37dbsnp146_grch37
rs4075958T/C chr5: 177357511 38ImmunoChip
rs4075958T/C chr5: 176784512 37ImmunoChip
rs4075958T/C chr5: 176717118 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs386590726rs4075958rs4075958142
rs17828896rs4075958rs4075958123
rs60148532rs4075958rs4075958130

Criteria

rs4075958 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs4075958 as derived from dbSNP:
  • in 5prime gene region
Gene(s) at location of variation:  RGS14 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs4075958, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.