Overview

IDAllelesLocationGenome BuildSource
rs3825932T/Cchr15: 7894310438dbsnp146
rs3825932T/C chr15: 79235446 37dbsnp146_grch37
imm_15_77022501A/G chr15: 78943104 38ImmunoChip
imm_15_77022501A/G chr15: 79235446 37ImmunoChip
imm_15_77022501A/G chr15: 77022501 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs56628007rs3825932rs3825932130
rs59484230rs3825932rs3825932130

Criteria

rs3825932 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs3825932 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  CTSH 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs3825932, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.