Overview

IDAllelesLocationGenome BuildSource
rs3810936T/Cchr9: 11479060538dbsnp146
rs3810936T/C chr9: 117552885 37dbsnp146_grch37
imm_9_116592706T/C chr9: 114790605 38ImmunoChip
imm_9_116592706T/C chr9: 117552885 37ImmunoChip
imm_9_116592706T/C chr9: 116592706 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs59393366rs3810936rs3810936130

Criteria

rs3810936 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs3810936 as derived from dbSNP:
  • has synonymous
  • has reference
Gene(s) at location of variation:  TNFSF15 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs3810936, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.