Overview

IDAllelesLocationGenome BuildSource
rs3807306G/Tchr7: 12894062638dbsnp146
rs3807306G/T chr7: 128580680 37dbsnp146_grch37
rs3807306T/G chr7: 128940626 38ImmunoChip
rs3807306T/G chr7: 128580680 37ImmunoChip
rs3807306T/G chr7: 128367916 36ImmunoChip
imm_7_128367916T/G chr7: 128940626 38ImmunoChip
imm_7_128367916T/G chr7: 128580680 37ImmunoChip
imm_7_128367916T/G chr7: 128367916 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs56608648rs3807306rs3807306130
rs56687406rs3807306rs3807306130
rs61596161rs3807306rs3807306130
rs386586787rs3807306rs3807306142

Criteria

rs3807306 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs3807306 as derived from dbSNP:
  • in 5prime gene region
  • in intron
  • in 5prime utr
Gene(s) at location of variation:  IRF5 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs3807306, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.