Overview

IDAllelesLocationGenome BuildSource
rs3806624A/Gchr3: 2772313238dbsnp146
rs3806624A/G chr3: 27764623 37dbsnp146_grch37
1kg_3_27739627T/C chr3: 27723132 38ImmunoChip
1kg_3_27739627T/C chr3: 27764623 37ImmunoChip
1kg_3_27739627T/C chr3: 27739627 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs13092970rs3806624rs3806624123
rs58409036rs3806624rs3806624130

Criteria

rs3806624 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs3806624 as derived from dbSNP:
  • in 5prime gene region
Gene(s) at location of variation:  EOMES 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs3806624, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.