ID | Alleles | Location | Genome Build | Source | rs3771317 | T/C | chr2: 190679236 | 38 | dbsnp146 |
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rs3771317 | T/C | chr2: 191543962 | 37 | dbsnp146_grch37 |
Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).
Study | Publication | Disease | Region | Marker | Alleles | P-value | OR | MAF | Gene(s) |
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Populations data from Ensembl 1000 Genome data release May 2013:
Linkage disequilibrium (LD) statistics are calculated for rs3771317, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.