rs3771317

Overview

ID	Alleles	Location	Genome Build	Source
rs3771317	T/C	chr2: 190679236	38	dbsnp146
rs3771317	T/C	chr2: 191543962	37	dbsnp146_grch37

Jbrowse

Historical Ids

Old Marker ID	New Marker ID	Current Marker ID	dbSNP Build
rs117754873	rs3771317	rs3771317	132
rs111193217	rs3771317	rs3771317	142
rs60953869	rs3771317	rs3771317	130

Criteria

rs3771317 meets the following criteria:

Criteria Name

Details

Disease Tags

Marker is GW-Significant in a Study

PBC

Marker is an index SNP in a Region

PBC

Functional Information

Gene function properties for rs3771317 as derived from dbSNP:

in intron

Gene(s) at location of variation: NAB1

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

Study	Publication	Disease	Region	Marker	Alleles	P-value	OR	MAF	Gene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

Linkage disequilibrium (LD) statistics are calculated for rs3771317, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.