Overview

IDAllelesLocationGenome BuildSource
rs3213094C/Tchr5: 15932376138dbsnp146
rs3213094C/T chr5: 158750769 37dbsnp146_grch37
imm_5_158683347T/C chr5: 159323761 38ImmunoChip
imm_5_158683347T/C chr5: 158750769 37ImmunoChip
imm_5_158683347T/C chr5: 158683347 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17875309rs3213094rs3213094126
rs60726014rs3213094rs3213094130

Criteria

rs3213094 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs3213094 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  IL12B 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs3213094, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.