Overview

IDAllelesLocationGenome BuildSource
rs3194051A/Gchr5: 3587617238dbsnp146
rs3194051A/G chr5: 35876274 37dbsnp146_grch37
imm_5_35912031T/C chr5: 35876172 38ImmunoChip
imm_5_35912031T/C chr5: 35876274 37ImmunoChip
imm_5_35912031T/C chr5: 35912031 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs58270601rs3194051rs3194051130
rs52816604rs3194051rs3194051128
rs16902513rs3194051rs3194051123

Criteria

rs3194051 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs3194051 as derived from dbSNP:
  • in 3prime gene region
  • has reference
  • has non-synonymous missense
Gene(s) at location of variation:  IL7R 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs3194051, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.