Overview

IDAllelesLocationGenome BuildSource
rs2838519G/Achr21: 4419514038dbsnp146
rs2838519G/A chr21: 45615023 37dbsnp146_grch37
imm_21_44439451T/C chr21: 44195140 38ImmunoChip
imm_21_44439451T/C chr21: 45615023 37ImmunoChip
imm_21_44439451T/C chr21: 44439451 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs60222796rs2838519rs2838519130
rs60296503rs2838519rs2838519130
rs17181160rs2838519rs2838519123
rs56429244rs2838519rs2838519130

Criteria

rs2838519 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs2838519 as derived from dbSNP:
  • in 5prime gene region

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs2838519, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.