Overview

IDAllelesLocationGenome BuildSource
rs281380T/Cchr19: 4871121338dbsnp146
rs281380T/C chr19: 49214470 37dbsnp146_grch37
imm_19_53906282T/C chr19: 48711213 38ImmunoChip
imm_19_53906282T/C chr19: 49214470 37ImmunoChip
imm_19_53906282T/C chr19: 53906282 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs57142194rs281380rs281380130
rs56455169rs281380rs281380130
rs17761327rs281380rs281380123

Criteria

rs281380 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs281380 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs281380, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.