Overview

IDAllelesLocationGenome BuildSource
rs259964A/Gchr20: 5924925438dbsnp146
rs259964A/G chr20: 57824309 37dbsnp146_grch37
rs259964T/C chr20: 59249254 38ImmunoChip
rs259964T/C chr20: 57824309 37ImmunoChip
rs259964T/C chr20: 57257704 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs58077914rs259964rs259964130
rs445121rs259964rs25996487
rs17250979rs259964rs259964123

Criteria

rs259964 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs259964 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  ZNF831 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs259964, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.