Overview

IDAllelesLocationGenome BuildSource
rs2371108G/Tchr3: 2771552738dbsnp146
rs2371108G/T chr3: 27757018 37dbsnp146_grch37
1kg_3_27732022A/C chr3: 27715527 38ImmunoChip
1kg_3_27732022A/C chr3: 27757018 37ImmunoChip
1kg_3_27732022A/C chr3: 27732022 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs60681036rs2371108rs2371108130

Criteria

rs2371108 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs2371108 as derived from dbSNP:
  • in 3prime gene region
Gene(s) at location of variation:  EOMES 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs2371108, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.