IDAllelesLocationGenome BuildSource
rs2297441G/Achr20: 6369622938dbsnp146
rs2297441G/A chr20: 62327582 37dbsnp146_grch37
imm_20_61798026A/G chr20: 63696229 38ImmunoChip
imm_20_61798026A/G chr20: 62327582 37ImmunoChip
imm_20_61798026A/G chr20: 61798026 36ImmunoChip


Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build


rs2297441 meets the following criteria:

Criteria Name
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs2297441 as derived from dbSNP:
  • in 5prime gene region
  • in intron
  • in 3prime utr
Gene(s) at location of variation:  RTEL1  TNFRSF6B  RTEL1-TNFRSF6B 


Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).



Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs2297441, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.