Overview

IDAllelesLocationGenome BuildSource
rs229533A/Cchr22: 3719107138dbsnp146
rs229533A/C chr22: 37587111 37dbsnp146_grch37
imm_22_35917057A/C chr22: 37191071 38ImmunoChip
imm_22_35917057A/C chr22: 37587111 37ImmunoChip
imm_22_35917057A/C chr22: 35917057 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs4493361rs229533rs229533126
rs9607422rs229533rs229533126
rs10394664rs229533rs229533126
rs17812747rs229533rs229533123
rs1292770rs229533rs229533111
rs74277461rs229533rs229533131
rs1101898rs229533rs229533111
rs2157205rs229533rs229533111
rs2858486rs229533rs229533126
rs5750391rs229533rs229533126
rs59178112rs229533rs229533130

Criteria

rs229533 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs229533 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  C1QTNF6 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs229533, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.