Overview

IDAllelesLocationGenome BuildSource
rs2242944G/Achr21: 3909325238dbsnp146
rs2242944G/A chr21: 40465178 37dbsnp146_grch37
imm_21_39387048A/G chr21: 39093252 38ImmunoChip
imm_21_39387048A/G chr21: 40465178 37ImmunoChip
imm_21_39387048A/G chr21: 39387048 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17213719rs2242944rs2242944123
rs57316815rs2242944rs2242944130
rs4817985rs2242944rs2242944113

Criteria

rs2242944 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs2242944 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs2242944, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.