IDAllelesLocationGenome BuildSource
rs2205960G/A,Tchr1: 17322233638dbsnp146
rs2205960G/A,T chr1: 173191475 37dbsnp146_grch37
imm_1_171458098A/C chr1: 173222336 38ImmunoChip
imm_1_171458098A/C chr1: 173191475 37ImmunoChip
imm_1_171458098A/C chr1: 171458098 36ImmunoChip


Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build


rs2205960 meets the following criteria:

Criteria Name
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs2205960 as derived from dbSNP:


    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).



    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs2205960, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.