Overview

IDAllelesLocationGenome BuildSource
rs2097282C/Tchr3: 4633653438dbsnp146
rs2097282C/T chr3: 46378025 37dbsnp146_grch37
imm_3_46353029A/G chr3: 46336534 38ImmunoChip
imm_3_46353029A/G chr3: 46378025 37ImmunoChip
imm_3_46353029A/G chr3: 46353029 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs34794030rs2097282rs2097282127
rs74282595rs2097282rs2097282131
rs62242976rs2097282rs2097282130

Criteria

rs2097282 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs2097282 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs2097282, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.