Overview

IDAllelesLocationGenome BuildSource
rs2076756A/Gchr16: 5072297038dbsnp146
rs2076756A/G chr16: 50756881 37dbsnp146_grch37
imm_16_49314382A/G chr16: 50722970 38ImmunoChip
imm_16_49314382A/G chr16: 50756881 37ImmunoChip
imm_16_49314382A/G chr16: 49314382 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs58984953rs2076756rs2076756130
rs17313502rs2076756rs2076756123

Criteria

rs2076756 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs2076756 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  NOD2 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs2076756, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.