IDAllelesLocationGenome BuildSource
rs2070197T/Cchr7: 12894894638dbsnp146
rs2070197T/C chr7: 128589000 37dbsnp146_grch37
imm_7_128376236A/G chr7: 128948946 38ImmunoChip
imm_7_128376236A/G chr7: 128589000 37ImmunoChip
imm_7_128376236A/G chr7: 128376236 36ImmunoChip


Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build


rs2070197 meets the following criteria:

Criteria Name
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 

Functional Information

Gene function properties for rs2070197 as derived from dbSNP:
  • in 3prime utr
Gene(s) at location of variation:  IRF5 


Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).



Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs2070197, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.