Overview

IDAllelesLocationGenome BuildSource
rs1980422C/Tchr2: 20374567338dbsnp146
rs1980422C/T chr2: 204610396 37dbsnp146_grch37
imm_2_204318641A/G chr2: 203745673 38ImmunoChip
imm_2_204318641A/G chr2: 204610396 37ImmunoChip
imm_2_204318641A/G chr2: 204318641 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs59734983rs1980422rs1980422130
rs17246801rs1980422rs1980422123
rs60654513rs1980422rs1980422130

Criteria

rs1980422 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs1980422 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs1980422, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.