Overview

IDAllelesLocationGenome BuildSource
rs1858037T/Achr2: 6537116638dbsnp146
rs1858037T/A chr2: 65598300 37dbsnp146_grch37
imm_2_65451804A/T chr2: 65371166 38ImmunoChip
imm_2_65451804A/T chr2: 65598300 37ImmunoChip
imm_2_65451804A/T chr2: 65451804 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17475161rs1858037rs1858037123

Criteria

rs1858037 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs1858037 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  SPRED2 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs1858037, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.