Overview

IDAllelesLocationGenome BuildSource
rs1701704T/Gchr12: 5601870338dbsnp146
rs1701704T/G chr12: 56412487 37dbsnp146_grch37
imm_12_54698754T/G chr12: 56018703 38ImmunoChip
imm_12_54698754T/G chr12: 56412487 37ImmunoChip
imm_12_54698754T/G chr12: 54698754 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs61455588rs1701704rs1701704130
rs386541874rs1701704rs1701704142

Criteria

rs1701704 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs1701704 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  IKZF4 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs1701704, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.