Overview

IDAllelesLocationGenome BuildSource
rs1517352A/Cchr2: 19106673838dbsnp146
rs1517352A/C chr2: 191931464 37dbsnp146_grch37
imm_2_191639709A/C chr2: 191066738 38ImmunoChip
imm_2_191639709A/C chr2: 191931464 37ImmunoChip
imm_2_191639709A/C chr2: 191639709 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs3796085rs1517352rs1517352108
rs60732438rs1517352rs1517352130

Criteria

rs1517352 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs1517352 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  STAT4 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs1517352, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.